Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2300
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0174 + 1410322-1410345,1410458-1410760,1411914-1412034,141...    27   7.3  
08_01_0050 + 350768-351214,352597-352717,352944-353118,353225-35...    27   9.7  

>03_01_0174 +
           1410322-1410345,1410458-1410760,1411914-1412034,
           1412147-1412321,1412417-1412487,1412586-1413268
          Length = 458

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 371 HAKCLNPTKXXXXXIVYFYNIVLSRLTHVNYGSYKVRCAICRXI 240
           HAK L  T+     ++Y  NI++S +T V+  S+ +    C  +
Sbjct: 167 HAKELTYTRGYLLELLYSNNIIISNVTFVDSPSWNLHPTYCTNV 210


>08_01_0050 +
           350768-351214,352597-352717,352944-353118,353225-353295,
           353575-354209
          Length = 482

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 200 RKSIIIRLQMSPATAFSMCTCYE-ICLRNYSLTFL*K*DIYWCCSIVY 60
           R  + + LQ +P         YE IC RN SLT + + D  W C  VY
Sbjct: 410 RDVVGVDLQRAPMLEAVHGAVYEGICFRNVSLTVIKRQD-RWHCESVY 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,096,189
Number of Sequences: 37544
Number of extensions: 170140
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)