Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2300
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic mul...    31   0.53 
AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical...    31   0.53 
Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and c...    27   6.5  

>DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic
           multivulva protein LIN-8 protein.
          Length = 386

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 56  DCKQYYSTNKYLIFTKMSSYNF*DISHNRYTLKRQLL 166
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical
           protein B0454.1 protein.
          Length = 386

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 56  DCKQYYSTNKYLIFTKMSSYNF*DISHNRYTLKRQLL 166
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical
           protein F15A4.3 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 444 FYCIAFFSVFVYRKT*RVTSSMCWSR*VLKSYKNN-NYIDCLFL*YCFVA 298
           FY  A F   +Y  T  +   +CW    +K + +N N + C FL   F A
Sbjct: 30  FYVFAIFQTSIYILTGYILVRICWIFLTIKVFHDNMNIMMCWFLCQWFQA 79


>Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 323 YFYNIVLSRLTHVNYGSYKVRCAICRXIRKETSNACYSP 207
           +FYN++L+   H  Y S+              S ACY P
Sbjct: 135 FFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYEP 173


>Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 323 YFYNIVLSRLTHVNYGSYKVRCAICRXIRKETSNACYSP 207
           +FYN++L+   H  Y S+              S ACY P
Sbjct: 135 FFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYEP 173


>AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and
           chloride-dependentantidepressant- and cocaine-sensitive
           dopamine transporterprotein.
          Length = 615

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 323 YFYNIVLSRLTHVNYGSYKVRCAICRXIRKETSNACYSP 207
           +FYN++L+   H  Y S+              S ACY P
Sbjct: 135 FFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYEP 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,716,919
Number of Sequences: 27780
Number of extensions: 183552
Number of successful extensions: 401
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)