Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2299
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    28   1.3  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    26   5.2  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   9.1  

>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 338 HVPRPHSILTRYTN---LIFIRETSTGLVKVARVKQHVSK 228
           ++ RPH   TR +N   ++FI      L K+ARV Q V K
Sbjct: 240 YISRPHVGSTRASNERQMLFINRRLVNLPKIARVIQEVFK 279


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 380 P*GRSLSLRAHN---RHHVPRPHSILTRYTNLIFIRETS 273
           P G +LS   HN   RH +P   ++   Y +LIF   TS
Sbjct: 156 PYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTS 194


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 280 SLMNIKFVYRVNIECGRGT**RLCALSDRLRPHGGYH 390
           S MN+KF+ ++ IE G         + D +R   GYH
Sbjct: 153 STMNLKFLVQLAIESGHEDYFETWKMWDTIRSACGYH 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,328
Number of Sequences: 5004
Number of extensions: 44574
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)