Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2299
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665     30   1.8  
10_08_0692 + 19918746-19919072,19919419-19919781,19919841-199199...    30   1.8  
06_01_0633 - 4616331-4616443,4616576-4616689,4616912-4617570,461...    28   5.4  
04_04_0355 - 24643036-24643308,24644084-24644320,24645051-246453...    28   5.4  
02_02_0061 + 6468190-6471046,6471318-6471736                           28   7.1  
01_05_0060 + 17742566-17742826,17744132-17744246,17746818-177469...    27   9.4  

>10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665
          Length = 269

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 133 GLIKWYY*LSILYGRHRFDYARTPIVQNLLLNFD 234
           G + W + +  ++G ++FD A+TP++   L  FD
Sbjct: 168 GFVAWVHAIEEVFGLNQFDAAKTPLLAAWLERFD 201


>10_08_0692 +
           19918746-19919072,19919419-19919781,19919841-19919977,
           19920298-19920304
          Length = 277

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 133 GLIKWYY*LSILYGRHRFDYARTPIVQNLLLNFD 234
           G + W + +  ++G ++FD A+TP++   L  FD
Sbjct: 168 GFVAWVHAIEEVFGLNQFDAAKTPLLAAWLERFD 201


>06_01_0633 -
           4616331-4616443,4616576-4616689,4616912-4617570,
           4617593-4617672
          Length = 321

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 540 NRVRI-IIVAVCYTLIKPIGADEGRGDHEGGRIT 442
           N+V+I +   V Y LI+ +  DEG  +H+G  I+
Sbjct: 204 NQVKIPVATVVFYNLIRMLNGDEGWFNHQGSNIS 237


>04_04_0355 -
           24643036-24643308,24644084-24644320,24645051-24645322,
           24647675-24647778,24648207-24648334
          Length = 337

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 531 RIIIVAVCYTLIKPIGADEGRGDHE 457
           R+++VA C+  I P+ A  G+G+ E
Sbjct: 140 RLLLVAACHNRIGPVYASSGKGNSE 164


>02_02_0061 + 6468190-6471046,6471318-6471736
          Length = 1091

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 381 SVRSQPVAKSAQPSSRSPSAFNINTIHELNIHQRNFNG 268
           S++   V  +    S   S FN++++ ELN+   N NG
Sbjct: 281 SIKQFHVENNELEGSLPSSIFNLSSLEELNLQTNNLNG 318


>01_05_0060 +
           17742566-17742826,17744132-17744246,17746818-17746993,
           17747323-17747418,17747504-17747782
          Length = 308

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -1

Query: 441 ATPRSSLRFVSGLGARLMVTSVRSQPVAKSAQPSSRSPSAFNINTIHELNIHQR 280
           A PR+++R  S   AR  ++S    P   +A+P++R P    ++T + L + QR
Sbjct: 29  AAPRATVR-ASASAARRTLSSAWELPGPSAARPAARKPRLEELDTTNML-LRQR 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,759,592
Number of Sequences: 37544
Number of extensions: 296281
Number of successful extensions: 714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)