Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2297
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    25   6.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   6.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   6.4  
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    25   8.5  

>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 92  GCVSAFYNVNTISERFDNYEI 30
           GC +AFY +  I+ER  N ++
Sbjct: 288 GCAAAFYTLGQIAERQGNIDL 308


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 447 RYKIFRFRTRSP*HPVY 397
           R+K+ R   RSP HP+Y
Sbjct: 254 RHKVKRLSVRSPAHPIY 270


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 221  IHTRSEPAKQIDRLSV*NRHVDVVAIRDIFTNNSQDN 331
            + +  E A Q  RL++ N H + V  R +  NN  DN
Sbjct: 1373 LKSEEEEASQHRRLNLVNNHKEHVLERAMSENNKMDN 1409


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 347 FFFF*YCLESYL*KYPE*QPHLHVDFKPTNDQFVWLVH 234
           +FFF   +  Y    P  Q  +   F P N++  W++H
Sbjct: 131 YFFFDTTVRIYQTLIPSQQRSIKPPFHPMNEEQPWILH 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,394
Number of Sequences: 5004
Number of extensions: 52921
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)