Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2295
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   1.7  
UniRef50_Q2JKQ1 Cluster: Sensor protein; n=2; Synechococcus|Rep:...    33   3.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = -3

Query: 478 PLSFSVDLLSGSRFRSGNRF 419
           PLSFS DLLSGSRFR+G  +
Sbjct: 396 PLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q2JKQ1 Cluster: Sensor protein; n=2; Synechococcus|Rep:
           Sensor protein - Synechococcus sp. (strain
           JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
           B-Prime)
          Length = 1247

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +3

Query: 234 EDKGRHDQIMAALKVTYFMRPSQFNKDRWASTASARRGGIY*YQPERLHRRPN 392
           E + R  +I  A+ VT+F++ + F++   A   S R   I+ Y PE L+R+P+
Sbjct: 407 ESEARFREIAEAVPVTFFLQSADFSR---ALYKSPRCEQIFGYTPEELYRQPD 456


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,856,656
Number of Sequences: 1657284
Number of extensions: 9237116
Number of successful extensions: 18177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18176
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)