Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2290
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    29   0.40 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   4.9  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = -3

Query: 250 LLTTLREHYQRSGVTPTFSNNI--FHDAVA--HREAPRHRRVIIRYAKVNLHVYRLTLIR 83
           ++T++  H Q +  + T    +  F D V   H+ A R R+ I  YAK   + Y   +++
Sbjct: 105 VITSMEIHEQLANHSLTLQKTLSAFSDQVIEFHKNAERKRKSIKEYAKKQENAYLEAVMQ 164

Query: 82  LDKNTYCFIYNESYICLYYRT*TNLNT 2
           +DK+   F   E+    Y R   N NT
Sbjct: 165 MDKSKSRFKGAETE---YNRALDNKNT 188


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +2

Query: 80   KTYECQAVNV*---VDLCIANYNPAVPRCLSV 166
            KTY C    +    + LC AN N  + RCL +
Sbjct: 1038 KTYVCLCTTIGLCNIYLCFANENHIISRCLQI 1069


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,931
Number of Sequences: 5004
Number of extensions: 36014
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)