Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2290
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565...    33   0.100
08_02_0420 - 16911814-16912851                                         29   2.8  
06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777           28   3.7  
05_06_0216 - 26453029-26454597                                         28   3.7  
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195...    28   3.7  
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338...    27   6.5  
05_03_0625 - 16325827-16326495                                         27   8.7  

>03_05_0845 -
           28155065-28155374,28156201-28156342,28156375-28156505,
           28156591-28156784,28156859-28156969,28157234-28157399,
           28157501-28157668,28157766-28158787
          Length = 747

 Score = 33.5 bits (73), Expect = 0.100
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 194 GKSWRDAATLIVLTKRSKQSLSRGGVNYEILLQTRTG-RGAFPNSVVFPGGVTEDADEDD 370
           G  W  +A      KR  Q++S+G  NYE++LQ + G R +   S   P      AD D 
Sbjct: 303 GTCWAPSAAATPEGKRPGQTISKGHKNYELMLQLQLGIRHSVGKSAAVPMRELSPADFDP 362

Query: 371 R 373
           +
Sbjct: 363 K 363


>08_02_0420 - 16911814-16912851
          Length = 345

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 281 ILLQTRTGRGAF-PNSVVFPGGVTEDADEDDRWLQLFSL 394
           +LL+  TGR AF P      G   +D D+DDR L  F L
Sbjct: 244 VLLELLTGRKAFCPPPDSAAGSQDDDDDDDDRSLAFFFL 282


>06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777
          Length = 248

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/78 (25%), Positives = 28/78 (35%)
 Frame = -3

Query: 376 PAIVFVSVFGNSAGEHHAVWKRTATRPSLQQNFVINTAARQRLLTTLREHYQRSGVTPTF 197
           P + F    G+    HH     TAT P    +     AA   +LT +    +R+G +P  
Sbjct: 97  PILAFPISGGSPPPSHHPPHHATATAPPFGADHTSAKAALTGILTAIFSSARRAGGSPPH 156

Query: 196 SNNIFHDAVAHREAPRHR 143
                  A   R   R R
Sbjct: 157 GRRYNAGAPTGRRLDRRR 174


>05_06_0216 - 26453029-26454597
          Length = 522

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 285 RIS*LTPPRDSDCLLRFVSTINVAASRQLFPITFFMMRSRTERHRGTA 142
           R+S + PPR   C+LR    +N  A R   P +      R ER    A
Sbjct: 65  RVSDILPPRYHRCILRHRGVMNWIAYRHAIPNSLMPAIRRHERRAARA 112


>03_01_0251 -
           1956985-1957058,1957238-1957361,1957646-1957744,
           1957821-1957919,1958097-1958195,1958306-1958404,
           1958744-1958820,1959232-1959952
          Length = 463

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 185 NVIGKSWRDAATLIVLTKRSKQSLSRG 265
           +++ + WRDAA  I LTK+ K+ ++ G
Sbjct: 111 SLVPERWRDAAEEINLTKKEKRRIAHG 137


>01_01_0456 -
           3385907-3386174,3386283-3386470,3386542-3387027,
           3387123-3387184,3387269-3387429,3388215-3388290,
           3388382-3388471,3388591-3388659,3389498-3389756
          Length = 552

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 143 AVPRCLSVRDRIMKNVIGKSWRDAATLIV 229
           ++ +CL  RD +   +  KSWR AA L V
Sbjct: 13  SILKCLCPRDVVRAALANKSWRRAAALAV 41


>05_03_0625 - 16325827-16326495
          Length = 222

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 269 VNYEILLQTRTGRGAFPNSVVFPGGVTEDADED 367
           V + +  Q   GRG +   V  PG V E  DED
Sbjct: 174 VAHTLCRQAYQGRGLWTERVPMPGAVREKIDED 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,701,885
Number of Sequences: 37544
Number of extensions: 239526
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)