Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2290
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-7|AAB37622.2|  295|Caenorhabditis elegans Nudix family pr...    34   0.052
U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p...    27   5.9  
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p...    27   5.9  

>U80437-7|AAB37622.2|  295|Caenorhabditis elegans Nudix family
           protein 7 protein.
          Length = 295

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +2

Query: 191 IGKSWRDAATLIVLTKRSKQSLSRGGVNYEILLQTRTGRGAFPNSVVFPGGVTEDAD 361
           +  SWR AA++I+  K +++ L         +L+  T     PN++VFPGGV +  D
Sbjct: 6   VTSSWRSAASIILACKTTRRVL---------MLKRGTTAKFMPNTMVFPGGVVDKTD 53


>U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical
           protein F09E5.7 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 161 SVRDRIMKNVIGKSWRDAATLIVLTKRSKQSLSRGGVN 274
           S+RD+I+KN+  KS    A LI+  K+S+Q L+   V+
Sbjct: 123 SLRDKILKNLTPKS---VAKLILSNKKSQQILTSDAVD 157


>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 305 RGAFPNSVVFPGGVTEDADEDDRWLQLF 388
           +GAF  SVV P G+  D   D  W  +F
Sbjct: 613 QGAFDGSVVGPAGIKADQMTDASWSYVF 640


>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 305 RGAFPNSVVFPGGVTEDADEDDRWLQLF 388
           +GAF  SVV P G+  D   D  W  +F
Sbjct: 613 QGAFDGSVVGPAGIKADQMTDASWSYVF 640


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,997,414
Number of Sequences: 27780
Number of extensions: 210773
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)