Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2288
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.8  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    27   2.3  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   3.1  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   4.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.4  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 252 VYNTYLMPI*ESIFHNAEKVDDLSKTIAF 338
           +YN++++PI +S F+  E  D  ++T+ F
Sbjct: 431 LYNSFIIPILQSFFYITESSDLRNRTVYF 459


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +1

Query: 382 NLVS-PYITSLFPNKCHT 432
           N+VS P+IT L P KCH+
Sbjct: 385 NIVSSPFITELTPTKCHS 402


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 303  QHCGILILK*ALDKCYKPPVEKLIQNVL 220
            +HCGI I++  L   Y P  ++L+Q V+
Sbjct: 1056 EHCGIRIIEAELFHGYNPEKKELLQEVV 1083


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 99  KKLVSKIGHD*QFFLENTLHFQKMP 173
           KKL S +    Q  LEN LHF   P
Sbjct: 610 KKLASALASQDQLVLENALHFVNPP 634


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 QKMPPLS*YIHTLNCLMSILKHF 230
           +K PPL  Y ++ NCL  I KHF
Sbjct: 871 EKKPPL--YSYSKNCLECIQKHF 891


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 343 HSNAIVFDRSSTFSALWN 290
           H    VFD++S F++LWN
Sbjct: 457 HCLQSVFDKNSDFASLWN 474


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 280  ENQYSTMLKRLMIYQKQLHLNGAARF-PEPSLRIKNLVSP-YITSLF 414
            EN Y ++L  L ++QK    NG  +  P      + L++P  +TS F
Sbjct: 1401 ENLYGSLLSILTVFQKHTSANGGDKVDPVFKDAFQKLITPNLLTSQF 1447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,867
Number of Sequences: 5004
Number of extensions: 42889
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)