Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2288
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857...    30   1.3  
05_04_0134 + 18318618-18318797,18318930-18319084,18319138-183192...    28   5.4  
08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469...    27   7.2  
02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553...    27   9.5  

>09_06_0059 -
           20584196-20584288,20584389-20585055,20585411-20585732,
           20585862-20586000,20586261-20586322,20586371-20586434,
           20586674-20586826,20586952-20587082,20587175-20587336,
           20588060-20588264
          Length = 665

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 384 FSVPVHHITLSKQMPYMMKFIPQERNEIKVENHS 485
           FS+P H + LS +     +   QE+NE +  NHS
Sbjct: 373 FSIPAHQLELSLRRSDYSRLESQEKNERRTLNHS 406


>05_04_0134 +
           18318618-18318797,18318930-18319084,18319138-18319254,
           18319286-18319412,18319740-18320216
          Length = 351

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 249 PVEKLIQNVLKLTLNS*GYECIKIKEAFFENV 154
           PV++ + ++L L LN  GY     KE F E V
Sbjct: 198 PVQRNVYDLLALVLNDAGYARTSSKEQFLETV 229


>08_01_0540 +
           4691929-4692014,4692915-4693125,4693756-4693885,
           4695422-4696072,4696179-4696395,4697040-4697111,
           4697167-4697257,4697367-4698363,4698914-4699044,
           4699584-4699802,4700110-4700805,4700912-4701121,
           4701606-4701710
          Length = 1271

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 509 FRSHLCLKRMIFHFYFITFLGYELHHVWHLFG 414
           F  +LCL   +FH ++I FL       WH  G
Sbjct: 447 FCQYLCLGTSVFHVHYIPFL---FERKWHWLG 475


>02_01_0743 -
           5530184-5531078,5531160-5531405,5531815-5532450,
           5534499-5534607,5536157-5536321,5536446-5536543,
           5536648-5536898
          Length = 799

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 304 KRLMIYQKQLHLNGAARFPEPSLRIKNLVSPYITSLFPNKCH 429
           +  + Y    H+NG A   + +   K    P + S+FPN+ H
Sbjct: 89  REAIFYSYTRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGH 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,354
Number of Sequences: 37544
Number of extensions: 236377
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)