Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2288
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts hom...    31   0.69 
AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    28   3.7  
AC017117-11|AAF16621.1|  303|Caenorhabditis elegans Hypothetical...    27   6.4  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      27   8.5  

>AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts
           homolog) family protein 2 protein.
          Length = 849

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
 Frame = -2

Query: 351 CSPIQMQLFLIDHQPFQHCGILILK*ALDKCYKPPVEKLIQNVLKLTLNS*GY--ECIKI 178
           C+   ++LF +++   +    L L   L+KC   P EKL+++ L   L    +  E + I
Sbjct: 276 CAVEALELFQLNYNYLEKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDI 335

Query: 177 KEAFFEN--VKYFL-EKIVSHVQFCLQVFYQLKK 85
            EA FEN  ++  L + I++ +  C Q+  +L +
Sbjct: 336 VEALFENQTIRQKLRDSILARMPDCSQLARRLMR 369


>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 533 FAHLHVKGFRSHLCLKRMIFHFYFITFLGYEL 438
           +A L  K F+ H   ++++FHF+F T L  EL
Sbjct: 109 YAFLQKKSFQKH---RQLMFHFHFETILNSEL 137


>AC017117-11|AAF16621.1|  303|Caenorhabditis elegans Hypothetical
           protein F43C11.11 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
 Frame = +3

Query: 213 SILKHFVLISQQEV-----YNTYLMPI*ESIFHNAEKVDDLSKTIAFEWGCTVSRAIT*N 377
           S++ HF +I + +      Y   +M       H A+   D  KT     GC +   IT  
Sbjct: 82  SVMDHFGIICEDKTWKITKYPNGIMDFTTGATHGADGSFDGKKTKVGIMGCLM--VITEG 139

Query: 378 *KFSVPVHHITLSKQMPYMMKFIPQERNEIKVENHSFETQ 497
              ++P   + +S  +PY    +P+E         S ET+
Sbjct: 140 CMKTIPPDEVYISSTLPYEETDVPEEMMTTLAMETSTETE 179


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 370 VMALETVQPHSNAIVFDRSSTFSALWNI 287
           V AL     H++   FD ++T SALWN+
Sbjct: 271 VHALSIAAVHAHTHRFDVTATLSALWNL 298


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 370 VMALETVQPHSNAIVFDRSSTFSALWNI 287
           V AL     H++   FD ++T SALWN+
Sbjct: 271 VHALSIAAVHAHTHRFDVTATLSALWNL 298


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 370 VMALETVQPHSNAIVFDRSSTFSALWNI 287
           V AL     H++   FD ++T SALWN+
Sbjct: 271 VHALSIAAVHAHTHRFDVTATLSALWNL 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,601,482
Number of Sequences: 27780
Number of extensions: 243393
Number of successful extensions: 462
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)