Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2285
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.4  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    26   3.2  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   3.2  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   5.5  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    25   5.5  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   7.3  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 494  QMLK*KKVAKRKRNMCMVHVTDSGRLLRLFFP 399
            Q+ + K+  KR  N+C + V  SG + ++F P
Sbjct: 1465 QLHRRKRAMKRLVNVCAIGVIRSGNISQIFLP 1496


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 486 KVKKSGKEKTEHVYGPRNRQWP 421
           KVK  GK   + +Y P+  QWP
Sbjct: 52  KVKSRGKRLRKSMYQPQEIQWP 73


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 428 SGRLLRLFFPTYSP-IAYLR*VAVTPAT 348
           +G L+RL+F TY P +AY+    V P T
Sbjct: 375 AGSLIRLYFLTYFPTVAYMSFQFVAPPT 402


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 66  SHVEPVNSPTRPDCYGVPLRDRVKKEIVLD*NKVY*Y 176
           +HV PV+ P    CY +  RDR   E++LD +K+  Y
Sbjct: 13  AHVPPVSEPLEIACYSLS-RDR---ELLLDDSKLSYY 45


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 88  HLPVRT-VMGSLSEIVLKKKLYWIRIKFIDI*LYYK 192
           +LP++T +  + SEI L K+L+  R  + D+  YYK
Sbjct: 233 NLPIQTHISENTSEIELVKELFPERKSYADVYDYYK 268


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 146 NFFFNTISERDPITVRTGR*VHGLN 72
           NF+ N ISER  I     R VHG N
Sbjct: 399 NFYMNLISERSKIDSSLPR-VHGFN 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,396
Number of Sequences: 5004
Number of extensions: 44338
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)