Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2285
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-1|AAK21483.1|  355|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    27   8.8  
AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical...    27   8.8  
AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical...    27   8.8  
AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical...    27   8.8  
AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical...    27   8.8  

>AF003141-1|AAK21483.1|  355|Caenorhabditis elegans Hypothetical
           protein W02D3.4 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 206 RVPSSL*YNYISINFILIQYNFFFNTISERDPITVRTGR 90
           +VP+S   NY+ + F++I  + F    SE  PI  +T R
Sbjct: 115 QVPASPFLNYLGLVFVVIGGSIFAQVRSEPLPIAKKTSR 153


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 495 SNVKVKKSGKEKTEHVYGPRNRQW 424
           S+VK+K  GKE  ++ +G    QW
Sbjct: 373 SHVKIKSVGKEGADNYFGMMKSQW 396


>AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1d protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 241 LPETRAICDLTHETIPKCMTEGCVIHLGF 327
           LP+T +I  L     P+C  E C+I L F
Sbjct: 144 LPKTVSINKLVFSNTPECEAEDCLIELMF 172


>AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1b protein.
          Length = 483

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 241 LPETRAICDLTHETIPKCMTEGCVIHLGF 327
           LP+T +I  L     P+C  E C+I L F
Sbjct: 144 LPKTVSINKLVFSNTPECEAEDCLIELMF 172


>AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1c protein.
          Length = 488

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 241 LPETRAICDLTHETIPKCMTEGCVIHLGF 327
           LP+T +I  L     P+C  E C+I L F
Sbjct: 149 LPKTVSINKLVFSNTPECEAEDCLIELMF 177


>AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1a protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 241 LPETRAICDLTHETIPKCMTEGCVIHLGF 327
           LP+T +I  L     P+C  E C+I L F
Sbjct: 147 LPKTVSINKLVFSNTPECEAEDCLIELMF 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,039,057
Number of Sequences: 27780
Number of extensions: 247940
Number of successful extensions: 470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)