Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2285
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   3.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +1

Query: 208 KQPIDVRAENRLPETRAICDLTHETIPKCMTEG 306
           + P      ++ P+T ++   TH T+ + + EG
Sbjct: 681 RSPSSQAQASQCPQTASLLSSTHSTLARSLMEG 713


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 211 QPIDVRAENRLPETRAICDL 270
           QP++ R+ + +PE R I D+
Sbjct: 38  QPLEARSADLVPEPRYIIDV 57


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -2

Query: 341 YKRVLNPKWMTQPSVIHFGI 282
           Y +   PK++ QP++++F +
Sbjct: 17  YDKHRAPKFLGQPTIVYFHV 36


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 398 LGKKVAITGHCLL 436
           LG  VAITG C L
Sbjct: 293 LGSLVAITGGCFL 305


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = -2

Query: 359  TPATSCYKRVLNPKWMTQPSVIHFGIVS*VKSQIARVSGSLFSALTSI 216
            T  T+   + +   WM+ P     G+++  K  +    G +++  T I
Sbjct: 1088 TTCTTLTSQTIRISWMSPPLSAANGVITGYKVIVIPSGGGIYTKDTKI 1135


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -3

Query: 298 SYISV*FHELSHK*PAFQAVYSQLSRRSV 212
           SY+S+ + E ++   AF+ +   L +R++
Sbjct: 281 SYVSIIYEESNYGIKAFEELEELLGKRNI 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,590
Number of Sequences: 438
Number of extensions: 3024
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)