Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2282
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-2|AAK39257.1|  208|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine re...    27   9.9  

>U39852-2|AAK39257.1|  208|Caenorhabditis elegans Hypothetical
           protein K10C2.2 protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -2

Query: 174 LKYQKHKNW*SNSFKCCFCFL*SNSVCATVLLG*YKIIHYMY*MLLLP 31
           LK ++ K       +C F +L  N +  T+L+G + ++H +Y +L+ P
Sbjct: 23  LKLEQEKAIVEAVLRCLFLYLARNPIYVTILIGIF-LLHAVYQVLMFP 69


>AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine
           receptor, class x protein98 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 589 QYI*HTHNSFFIAKVCGLIENRLILFVYSVALAKSVIIQVYY 464
           ++I    +SF++      + N +ILF Y V      ++QVYY
Sbjct: 77  RFIAKNMSSFYLLCSSKTVSNSIILFCYLVYNGPVSVLQVYY 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,992,583
Number of Sequences: 27780
Number of extensions: 194245
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)