Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2279
         (466 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3TT31 Cluster: ABC branched chain amino acid transport...    32   5.4  
UniRef50_A2DFE4 Cluster: Adenylate and Guanylate cyclase catalyt...    31   9.4  

>UniRef50_A3TT31 Cluster: ABC branched chain amino acid transporter,
           inner membrane subunit; n=1; Oceanicola batsensis
           HTCC2597|Rep: ABC branched chain amino acid transporter,
           inner membrane subunit - Oceanicola batsensis HTCC2597
          Length = 335

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 431 QNKIFYYFCLSVCLFIPANLWNGWTD 354
           Q   +YYF L VCL + A LW  W++
Sbjct: 165 QGNAYYYFILVVCLLLIAGLWVVWSN 190


>UniRef50_A2DFE4 Cluster: Adenylate and Guanylate cyclase catalytic
           domain containing protein; n=5; Trichomonas vaginalis
           G3|Rep: Adenylate and Guanylate cyclase catalytic domain
           containing protein - Trichomonas vaginalis G3
          Length = 1681

 Score = 31.5 bits (68), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 458 FTTCLWYIHQNKIFYYFCLSVCLFIPANLW 369
           F    W I+      YFCL +C+F+P N+W
Sbjct: 305 FNLSNWVIYGVPAAIYFCL-ICVFLPLNIW 333


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 393,921,691
Number of Sequences: 1657284
Number of extensions: 6334111
Number of successful extensions: 13270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13258
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)