Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2279
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   4.3  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   4.3  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   4.3  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    25   5.7  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 330 PISESLVKIGPAVPEISRNKQTDRQTKIVKNFILVY 437
           P+SE +  I P  P+I  ++   R T+   NF+  Y
Sbjct: 380 PVSELISVIPPTTPQIYISRTPVRHTQFDVNFLSPY 415


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 321 HQLPISESLVKIGPAVPE 374
           H +P+ E +V IGP  PE
Sbjct: 417 HGIPVQERIVNIGPNKPE 434


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 96 PRSYRDSDLKMGNHSEVAR 40
          P+SYR+  L+  NH E AR
Sbjct: 25 PKSYREEFLQQWNHYETAR 43


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 111 K*PFIPRSYRDSDLKMGNHSEVARLSLFQK 22
           K P+I  ++R S L + NH+ +A  SLF++
Sbjct: 363 KSPYIKTNHRVSGLMLANHTSIA--SLFKR 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,952
Number of Sequences: 5004
Number of extensions: 29605
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)