Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2279
         (466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_34639| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-25)         27   5.8  

>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1239

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 457  LLHAY-GTYTKIKFFTIFVCLSVCLFRLISGTAGPIL 350
            ++H Y G  T++ + T F C+ V L R ++    P+L
Sbjct: 903  IVHLYWGRITEVPYRTSFTCIGVVLRRSLTAHRSPVL 939



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 457 LLHAY-GTYTKIKFFTIFVCLSVCLFRLISGTAGPIL 350
           ++H Y G  T+I + T F C+ V L R  +    P+L
Sbjct: 856 IIHLYWGRITEILYRTSFTCIGVVLRRSFTAHRSPVL 892



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 457  LLHAY-GTYTKIKFFTIFVCLSVCLFRLISGTAGPIL 350
            ++H Y G  T+I + T F C+ V L + ++    P+L
Sbjct: 1042 IVHLYWGRITEIPYHTSFTCIVVVLRKSLTAHRSPVL 1078


>SB_34639| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-25)
          Length = 941

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 99  IPRSYRDSDLKMGNHSEVA-RLSLFQKKK 16
           +P  +RDSD+ M N+ E A +  ++QKKK
Sbjct: 206 VPLPFRDSDVSMPNNREQALKRVMWQKKK 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,967,658
Number of Sequences: 59808
Number of extensions: 191534
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)