Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2279
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   0.93 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   0.93 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.93 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.9  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 99  IPRSYRDSDLKMGNHSE 49
           +PR + D++ K+GNH +
Sbjct: 510 LPRIHHDAEWKVGNHED 526


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 99  IPRSYRDSDLKMGNHSE 49
           +PR + D++ K+GNH +
Sbjct: 425 LPRIHHDAEWKVGNHED 441


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 99  IPRSYRDSDLKMGNHSE 49
           +PR + D++ K+GNH +
Sbjct: 744 LPRIHHDAEWKVGNHED 760


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 415 TIFVCLSVCLFRLISGTAGPILTR 344
           ++FV LS+  F +++   GP+ T+
Sbjct: 284 SVFVFLSLMEFAVVNNYMGPVATK 307


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 371 WNGWTDFDET 342
           WN W D+ ET
Sbjct: 696 WNKWNDWQET 705


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 371 WNGWTDFDET 342
           WN W D+ ET
Sbjct: 696 WNKWNDWQET 705


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 371 WNGWTDFDET 342
           WN W D+ ET
Sbjct: 696 WNKWNDWQET 705


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,573
Number of Sequences: 438
Number of extensions: 1998
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)