Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2275
         (621 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    30   0.018
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   2.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.3  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 0.018
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +1

Query: 415 QGSRRPAARPGLRQAGRRHLHDPRPGAARSDDRVTRGGAR 534
           QG RR AARPG+       +  PR G AR+    T GG R
Sbjct: 38  QGGRRRAARPGV-------VTTPRWGCARASSATTMGGPR 70


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 106 STYLLNVKRTTANSQELASVLR 41
           S YL+NV +TT   +E   ++R
Sbjct: 239 SDYLINVFKTTLQEREKKKIIR 260


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 60  SCELAVVLLTFNKYVLSFMMNKN 128
           +CEL  V+L +  + L+FM++ N
Sbjct: 135 TCELFFVILLWISFFLNFMLHCN 157


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 107 KYILVERQKNYRQFTRTSLRPEKNWQETQRA 15
           KYI ++R+    +    S R  K W + +RA
Sbjct: 180 KYITIKRKSELAENLGLSERQIKIWFQNRRA 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,324
Number of Sequences: 336
Number of extensions: 2400
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)