Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2275
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0975 - 21978642-21979520 31 0.97
06_03_1132 - 27883151-27883777 29 3.0
06_03_0828 + 25137782-25138312,25141349-25141588 29 3.9
03_01_0595 + 4391877-4392005,4392155-4392287,4392402-4392490,439... 29 3.9
01_01_0215 - 1838452-1838685,1839125-1839240,1840200-1840734 29 3.9
02_05_0260 - 27233734-27234324,27234422-27234573,27235006-272351... 28 5.2
01_06_1152 + 34939884-34941824 28 5.2
11_04_0217 + 14979455-14979781 28 6.9
02_05_0750 - 31479876-31480985 28 6.9
07_03_1533 + 27523811-27524710 27 9.1
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 27 9.1
01_01_0676 + 5194718-5194940,5195420-5195952 27 9.1
>10_08_0975 - 21978642-21979520
Length = 292
Score = 30.7 bits (66), Expect = 0.97
Identities = 25/73 (34%), Positives = 30/73 (41%)
Frame = +1
Query: 319 HLKHTILLFNRFPEASNGRDACEGASVHERPGQGSRRPAARPGLRQAGRRHLHDPRPGAA 498
H H LLF R P+ R A G R + +RR + + G R H A
Sbjct: 87 HHHHPNLLFFRTPQVGPARAAGGGDEPEPRGKKVARRRSFLAAIFGGGGRGRH------A 140
Query: 499 RSDDRVTRGGARS 537
R DD V RGG S
Sbjct: 141 RGDDDVVRGGGVS 153
>06_03_1132 - 27883151-27883777
Length = 208
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 382 CEGASVHERP---GQGSRRPAARPGLRQAGRRHLHDPRPGAARSDDRVTRGGARSQFAL 549
CEG V E GSR P R + RRH H P A+R+ V +R++ A+
Sbjct: 103 CEGLLVSEGALLGCAGSRPPPPRASRSGSRRRHRHSLLPRASRARGDVAAAASRARGAV 161
>06_03_0828 + 25137782-25138312,25141349-25141588
Length = 256
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 385 EGASVHERPGQGSRRPAARPGLRQAGRRHLHDPRPGAARSDDRVTRGGARSQFA 546
EG + R G+G R R G A R H + R GAA + + R G ++ A
Sbjct: 70 EGRQIRARLGEGEGR--RRRGRGAARRSHAEERRGGAASREIAMRRSGVAARSA 121
>03_01_0595 +
4391877-4392005,4392155-4392287,4392402-4392490,
4392639-4392696,4393182-4393337,4393556-4393704,
4394208-4394327,4394513-4394726,4394813-4394915,
4395022-4395069,4395267-4395312,4395647-4395834,
4395943-4396105,4396227-4396292
Length = 553
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 471 MPTSCLSQPR-TGSWAARALSGPLMNRRAFASISAVA 364
M T CLS TG+ AR+ +G L R FAS S A
Sbjct: 1 MDTGCLSSMNITGTSQARSFAGQLPTHRCFASSSIQA 37
>01_01_0215 - 1838452-1838685,1839125-1839240,1840200-1840734
Length = 294
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +1
Query: 385 EGASVHERPGQGSRRPAARPGLRQAGRRHLHDPRPGAARSDDRVTRGG 528
EG + RP R R GL RR L D G DD + GG
Sbjct: 40 EGLTRRRRPRSWGTRLGDRGGLDDGDRRRLSDGDRGGLSDDDGGSSGG 87
>02_05_0260 -
27233734-27234324,27234422-27234573,27235006-27235153,
27235547-27235956,27236137-27236212
Length = 458
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 388 GASVHERPGQGSRRPAARPGLRQAGRRHLHDPRPGA 495
G S PG S RPAAR G + PRPG+
Sbjct: 408 GGSGGGAPGSASPRPAARGGGGGGAHGYGQSPRPGS 443
>01_06_1152 + 34939884-34941824
Length = 646
Score = 28.3 bits (60), Expect = 5.2
Identities = 24/59 (40%), Positives = 29/59 (49%)
Frame = -3
Query: 439 GQLGGASLVRAAHEPTRLRKHLGRCLLREIC*IAKLYV*GEQLKVSHPTARRVNE*VSE 263
GQL G + VRAA LRK G C E L++ + SHP ARR+ E V E
Sbjct: 490 GQLDGVAKVRAAMRRRGLRKEPG-CSYVEHKGKVHLFMADDH---SHPQARRIYELVVE 544
>11_04_0217 + 14979455-14979781
Length = 108
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 601 PSHDVVNDGQ*IVIRLTIGRIGTGPPLESLC 509
P+H V+ DG+ +VI + +G + P + LC
Sbjct: 17 PTHAVIEDGRVMVIEVAVGMLDQHPIGQILC 47
>02_05_0750 - 31479876-31480985
Length = 369
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 442 DGQ-LGGASLVRAAHEPTRLRKHLGRC 365
DG+ LGGA VR HE L K LG C
Sbjct: 281 DGRHLGGAEEVRRMHESGELSKALGDC 307
>07_03_1533 + 27523811-27524710
Length = 299
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = +1
Query: 367 NGRDACEGASVHERPGQG---SRRPAARPGLRQAGRRHLHDPRPGAARSDD 510
NG A GA H R G RR R R+ RRH H P DD
Sbjct: 149 NGTGAGAGAGNHTRGSGGVVVRRRHRRRRRSRRRRRRHRHHPGVREGEDDD 199
>07_03_0539 -
19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 406 RPGQGSRRPAARPGLRQAGRRHLHDPRPGAARSDDR 513
R G R +A G +GRR HD R R D+R
Sbjct: 173 RDKHGERERSASIGYSSSGRRGHHDDRESHNRRDER 208
>01_01_0676 + 5194718-5194940,5195420-5195952
Length = 251
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 204 LMNFYFHLNNICFYLFSLIHSLTHSFTLL 290
L NF++ NN+ Y+ S+++SL F L+
Sbjct: 122 LDNFWYQYNNMKGYILSILNSLAEYFHLI 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,420,068
Number of Sequences: 37544
Number of extensions: 264144
Number of successful extensions: 749
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -