Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2275
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ...    29   3.5  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    29   3.5  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1b protein.
          Length = 1021

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +1

Query: 343 FNRFPEASNGRDACEGASVHERPGQGSRRPAARPGLRQAGRRHLHDPRPGAARSDDRVTR 522
           + R P   +       A+V+  PG G R     P       RHL++  P        VT 
Sbjct: 363 YPRVPVPRHSPSFTSSATVYPLPGTGGR-----PRFGSDAHRHLYEEVPMGGGGGPSVTN 417

Query: 523 GGARS 537
           GG RS
Sbjct: 418 GGYRS 422


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1a protein.
          Length = 1085

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +1

Query: 343 FNRFPEASNGRDACEGASVHERPGQGSRRPAARPGLRQAGRRHLHDPRPGAARSDDRVTR 522
           + R P   +       A+V+  PG G R     P       RHL++  P        VT 
Sbjct: 363 YPRVPVPRHSPSFTSSATVYPLPGTGGR-----PRFGSDAHRHLYEEVPMGGGGGPSVTN 417

Query: 523 GGARS 537
           GG RS
Sbjct: 418 GGYRS 422


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 513  SDSRGGPVPIRPIVSRITIHWPSFTTS*LG 602
            +D +GGP+P+R    +   +W  FT   LG
Sbjct: 1600 TDPKGGPLPVRCYKQQDDSYWVEFTPEHLG 1629


>U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical
           protein C08A9.9 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 617 VTPGFSQSRRCKRRPVNCNTTHY--RANWDRAPPRVT 513
           VTP  S++ R      N   THY  ++N+D AP   T
Sbjct: 206 VTPSASENNRTSNAASNGKQTHYLTQSNFDNAPSYAT 242


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 516  DSRGGPVPIRPIVSRITIHWPSFTTS*LG 602
            D +GGP+P+R    +   +W  FT   LG
Sbjct: 2019 DPKGGPLPVRCYKQQDDSYWVEFTPEHLG 2047


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,266
Number of Sequences: 27780
Number of extensions: 218151
Number of successful extensions: 503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)