Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2275
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.7  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 180 PS*FSIFRNLTNQIKSKNF 124
           PS + +FR+L N +  KNF
Sbjct: 278 PSDYFLFRSLQNSLNGKNF 296


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 15  CPLSFLPILLRTEASSCELAVVLLTFNKYVLSFMMNKNFL 134
           C L+ L   LR+E + CE  + +++ +  ++   M   +L
Sbjct: 166 CALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWL 205


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 149 VRFLKIENYEGSLNNYYYFNE 211
           +R   I + EG+  N+YY  E
Sbjct: 398 IRVENIIDLEGAPQNFYYIEE 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,903
Number of Sequences: 438
Number of extensions: 3017
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)