Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2274
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    27   0.99 
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   0.99 
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    27   0.99 
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.3  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    24   9.3  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    24   9.3  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    24   9.3  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 143 LQLERKDTNLGRPRVRKQSVSRTPRPWRESKDKAS*VVSLIQSIL 277
           L+L RKD +    R+R  S+ +   P  ESK   S V   IQS+L
Sbjct: 75  LELLRKDVS-SLSRLRHPSLLQVVEPLEESKSSMSFVTRRIQSML 118


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 169 LRKTQSEKTKRLANPSTVEREQGQSEL 249
           LRKT   K  +LANP T+E +  +S L
Sbjct: 417 LRKTDDSKAVQLANPKTLEFQVVRSSL 443


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 45  IIELPPRRGIYPYF*SETSLSALRVKFNSRQIRYSL 152
           + ELPP+R  Y Y  S TS+S +    N R+++  L
Sbjct: 177 VTELPPKRPPYHYESSSTSISFVNGGPNFRKVKSGL 212


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 158 KDTNLGRPRVRKQSVSRTPRPWRESKDKA 244
           +D N  RP  R  S S +PR +R S   A
Sbjct: 8   RDFNRSRPEKRHASRSSSPRSFRPSNQNA 36


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 295 GASLLIENALYKRNNLARFVLALSPRS 215
           GAS+ +E+  + R N  + + AL PRS
Sbjct: 269 GASVALESLKHIRPNSVKGIFALCPRS 295


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 236 PCSLSTVEGFARRFVFSLWVFLSSYLFS 153
           PCSL   E  +   V  LW+ +SS +F+
Sbjct: 61  PCSLYPEEPCSLNIVGPLWIDVSSIVFA 88


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 323 VHVKEVQ-LLRCVSFNRECFV 264
           V +K++Q  LRC+ F++EC +
Sbjct: 7   VCLKQIQSTLRCIDFSKECTI 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,699,248
Number of Sequences: 5004
Number of extensions: 31252
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)