Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2274
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0048 - 361999-362220,362321-362412,362499-362561,362606-36...    29   2.3  
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966     28   3.9  
07_01_0026 + 190568-190829,192475-194534,194620-195168                 27   6.9  
12_01_0682 + 5817109-5817612,5817776-5817844,5818405-5818538,581...    27   9.1  
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570...    27   9.1  
11_01_0551 + 4361640-4363386,4363443-4363687                           27   9.1  

>11_01_0048 -
           361999-362220,362321-362412,362499-362561,362606-362717,
           363285-364090,368545-368806
          Length = 518

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -2

Query: 187 HSGSS*VRIFSLKL*RICRELNFTLNALKEVSLQKYG*MPLRGGNSIIR 41
           HSGSS ++IFSLKL      ++ T  A+ +  +Q YG M +R     +R
Sbjct: 112 HSGSSMLQIFSLKL------VSITAPAIGDDPIQVYGFMAVRDHMDCLR 154


>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
          Length = 766

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 314 KEVQLLRCVSFNRECFV*EKQPSSLCPCS 228
           ++V    CVS N +CF     P  +C CS
Sbjct: 272 RKVDTYACVSHNSKCFNSSNGPGYICNCS 300


>07_01_0026 + 190568-190829,192475-194534,194620-195168
          Length = 956

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 174 EDPE*ENKASREPLDRGERARTKR-ARL 254
           +D + ENKA+  P+D GER  ++R ARL
Sbjct: 866 DDDDSENKATPFPVDGGERMSSRRPARL 893


>12_01_0682 +
           5817109-5817612,5817776-5817844,5818405-5818538,
           5819669-5819861
          Length = 299

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -2

Query: 187 HSGSS*VRIFSLKL*RICRELNFTLNALKEVSLQKYG*MPLR 62
           H G S ++IFSLKL  I    NF   A    ++Q YG M +R
Sbjct: 20  HIGGSMMQIFSLKLAEIS---NFATRAPGAGAIQLYGFMAVR 58


>12_01_0671 -
           5702051-5702159,5702493-5703216,5703910-5704476,
           5704654-5704873,5705303-5707207
          Length = 1174

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 250 GCFSYTKHSLLKETHRRSCTSFTCTKLQAHNF 345
           GC S +  S L +  RR  +SF+CT +   ++
Sbjct: 203 GCVSASNTSRLLKVGRREGSSFSCTPISTRSY 234


>11_01_0551 + 4361640-4363386,4363443-4363687
          Length = 663

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 260 EKQPSSLCPCSLSTVEGFARRFVFSLWVFLSSYLFSQAVTNLSR 129
           +KQ SSLC  S +TV  F    +  LW+  S      A  N+S+
Sbjct: 8   QKQRSSLC--STATVVVFVALCLVGLWMISSPETIPAAAANVSK 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,290,418
Number of Sequences: 37544
Number of extensions: 178927
Number of successful extensions: 444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)