Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2274
(446 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74739-3|CAA98995.2| 3085|Homo sapiens 214K23.1 (breast cancer 2... 29 7.2
X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein. 29 7.2
U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein. 29 7.2
DQ897648-1|ABI74674.1| 2649|Homo sapiens breast and ovarian canc... 29 7.2
AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early ... 29 7.2
AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early ... 29 7.2
AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early ... 29 7.2
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 29 9.5
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 29 9.5
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 29 9.5
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 29 9.5
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 29 9.5
>Z74739-3|CAA98995.2| 3085|Homo sapiens 214K23.1 (breast cancer 2,
early onset, protein) protein.
Length = 3085
Score = 29.1 bits (62), Expect = 7.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 139 FVTA*EKRYELRKTQSEKTKRLANPSTVEREQGQSELGCFSYTKHSLLKETHRRSC 306
F TA K+ ++ K +K K L + E+EQG SE+ FS+ LK +R +C
Sbjct: 1524 FHTASGKKVKIAKESLDKVKNLFD----EKEQGTSEITSFSHQWAKTLK--YREAC 1573
>X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein.
Length = 3418
Score = 29.1 bits (62), Expect = 7.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 139 FVTA*EKRYELRKTQSEKTKRLANPSTVEREQGQSELGCFSYTKHSLLKETHRRSC 306
F TA K+ ++ K +K K L + E+EQG SE+ FS+ LK +R +C
Sbjct: 1524 FHTASGKKVKIAKESLDKVKNLFD----EKEQGTSEITSFSHQWAKTLK--YREAC 1573
>U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein.
Length = 3418
Score = 29.1 bits (62), Expect = 7.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 139 FVTA*EKRYELRKTQSEKTKRLANPSTVEREQGQSELGCFSYTKHSLLKETHRRSC 306
F TA K+ ++ K +K K L + E+EQG SE+ FS+ LK +R +C
Sbjct: 1524 FHTASGKKVKIAKESLDKVKNLFD----EKEQGTSEITSFSHQWAKTLK--YREAC 1573
>DQ897648-1|ABI74674.1| 2649|Homo sapiens breast and ovarian cancer
susceptibility protein 2 truncated variant protein.
Length = 2649
Score = 29.1 bits (62), Expect = 7.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 139 FVTA*EKRYELRKTQSEKTKRLANPSTVEREQGQSELGCFSYTKHSLLKETHRRSC 306
F TA K+ ++ K +K K L + E+EQG SE+ FS+ LK +R +C
Sbjct: 1524 FHTASGKKVKIAKESLDKVKNLFD----EKEQGTSEITSFSHQWAKTLK--YREAC 1573
>AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early onset
protein.
Length = 3418
Score = 29.1 bits (62), Expect = 7.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 139 FVTA*EKRYELRKTQSEKTKRLANPSTVEREQGQSELGCFSYTKHSLLKETHRRSC 306
F TA K+ ++ K +K K L + E+EQG SE+ FS+ LK +R +C
Sbjct: 1524 FHTASGKKVKIAKESLDKVKNLFD----EKEQGTSEITSFSHQWAKTLK--YREAC 1573
>AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early onset
protein.
Length = 3418
Score = 29.1 bits (62), Expect = 7.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 139 FVTA*EKRYELRKTQSEKTKRLANPSTVEREQGQSELGCFSYTKHSLLKETHRRSC 306
F TA K+ ++ K +K K L + E+EQG SE+ FS+ LK +R +C
Sbjct: 1524 FHTASGKKVKIAKESLDKVKNLFD----EKEQGTSEITSFSHQWAKTLK--YREAC 1573
>AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early onset
protein.
Length = 3418
Score = 29.1 bits (62), Expect = 7.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 139 FVTA*EKRYELRKTQSEKTKRLANPSTVEREQGQSELGCFSYTKHSLLKETHRRSC 306
F TA K+ ++ K +K K L + E+EQG SE+ FS+ LK +R +C
Sbjct: 1524 FHTASGKKVKIAKESLDKVKNLFD----EKEQGTSEITSFSHQWAKTLK--YREAC 1573
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
SRm300 protein.
Length = 2296
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 179 PRVRKQSVSRT-PRPWRESKDKAS 247
P RK+S SRT P PW+ S+ +AS
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRAS 1869
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 179 PRVRKQSVSRT-PRPWRESKDKAS 247
P RK+S SRT P PW+ S+ +AS
Sbjct: 878 PTSRKRSRSRTSPAPWKRSRSRAS 901
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 179 PRVRKQSVSRT-PRPWRESKDKAS 247
P RK+S SRT P PW+ S+ +AS
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRAS 1869
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 179 PRVRKQSVSRT-PRPWRESKDKAS 247
P RK+S SRT P PW+ S+ +AS
Sbjct: 369 PTSRKRSRSRTSPAPWKRSRSRAS 392
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 179 PRVRKQSVSRT-PRPWRESKDKAS 247
P RK+S SRT P PW+ S+ +AS
Sbjct: 1894 PTSRKRSRSRTSPAPWKRSRSRAS 1917
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,487,344
Number of Sequences: 237096
Number of extensions: 1011157
Number of successful extensions: 2183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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