Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2274
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    30   0.88 
AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical ...    27   6.2  

>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 268 LYKRNNLARFVLALSPRSRGSRDALFSHSGSS 173
           LY+ NNL  F+L ++P  RGS+   +  SGS+
Sbjct: 268 LYEDNNLCLFLLFIAPIFRGSKCLAYMVSGSA 299


>AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical
           protein F56F4.3 protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 208 NPSTVEREQGQSELGCFSYTKHSLLKETHRRSCTSFTCTKLQAHNFLFI 354
           NPS +E E+ + E+G  + ++ S    T+R+     +C  L  +N +FI
Sbjct: 34  NPSKIEAEELEQEIGSRNISRPS----TYRQLSLLLSCVTLLKNNMVFI 78


>Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 421 RYTLLIIFPMQFSILTQNQICYK*IKNYAPATWC 320
           R+ LL++   QFSI   +Q  +    NY P   C
Sbjct: 7   RFHLLVLLTWQFSIFFASQQIFPIFSNYVPQWTC 40


>AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 421 RYTLLIIFPMQFSILTQNQICYK*IKNYAPATWC 320
           R+ LL++   QFSI   +Q  +    NY P   C
Sbjct: 7   RFHLLVLLTWQFSIFFASQQIFPIFSNYVPQWTC 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,336,583
Number of Sequences: 27780
Number of extensions: 172187
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)