Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2274
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.38 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.50 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   2.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 184 SEKTKRLANPSTVEREQGQSEL-GCFSYTKHSLLKETHRRSCT 309
           S+ TK L +PS   +E+G+ E+ G      + L K  HR S T
Sbjct: 563 SQSTKELLSPSYRVKERGEIEVKGKGIMKTYWLEKREHRSSST 605


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 210 VRETLCFLTLGLPKFVSFLSSCNESVAS*ILLSTRLKKFHFKNMDR 73
           V ETL  ++  +P   S+ +     VAS ++L+  +  FH +  DR
Sbjct: 311 VAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNFHHRTPDR 356


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 210 VRETLCFLTLGLPKFVSFLSSCNESVAS*ILLSTRLKKFHFKNMDR 73
           V ETL  ++  +P   S+ +     VAS ++L+  +  FH +  DR
Sbjct: 243 VAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDR 288


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 210 VRETLCFLTLGLPKFVSFLSSCNESVAS*ILLSTRLKKFHFKNMDR 73
           V ETL  ++  +P   S+ +     VAS ++L+  +  FH +  DR
Sbjct: 243 VAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDR 288


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 210 VRETLCFLTLGLPKFVSFLSSCNESVAS*ILLSTRLKKFHFKNMDR 73
           V ETL  ++  +P   S+ +     VAS ++L+  +  FH +  DR
Sbjct: 243 VAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDR 288


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 161 DTNLGRPRVRKQSVSRTPRPWRESK 235
           DT++ +  VRK   ++ P+P  ++K
Sbjct: 234 DTSMAKSFVRKVHATKPPKPQTKTK 258


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 210 VRETLCFLTLGLPKFVSFLSSCNESVAS*ILLSTRLKKFHFKNMDR 73
           V E++   +  +P   S+ +     VAS ++L+  +  FH +  DR
Sbjct: 311 VAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLNFHHRTPDR 356


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 166 ELRKTQSEKTKRLANPSTVEREQ 234
           E  K   E+T R  N  + EREQ
Sbjct: 24  EKEKLLEERTNRKRNSRSREREQ 46


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 166 ELRKTQSEKTKRLANPSTVEREQ 234
           E  K   E+T R  N  + EREQ
Sbjct: 24  EKEKLLEERTNRKRNSRSREREQ 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,984
Number of Sequences: 438
Number of extensions: 2049
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)