Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2272
         (471 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    29   0.029
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    28   0.038
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   4.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.7  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   5.7  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   5.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 0.029
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 465 VRPPDGLALPRELLEPP--DMVR*SA*SE*YGSAHNECPHGTELSTLVTSP 319
           V  P G+  P     PP  ++ + S   + Y    N  PHG+  S+L+T+P
Sbjct: 218 VATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNITPHGSNTSSLITTP 268


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 0.038
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 299 PMGTHFPPPRVDHS--PF-WGVS*VGPSPQRSSPSGEPL 192
           P   H   PR+ H   PF WG      SPQ S+P+G P+
Sbjct: 66  PQPLHPSVPRLGHPQWPFAWGSLXRSSSPQTSAPTGPPI 104


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 271 LGGGKWVPIGGHPNNVGG 324
           +G  +  P+G H N VGG
Sbjct: 392 IGSERATPVGYHQNEVGG 409


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 335 HSSLPPTLLGCPPMGTHFP 279
           H+ LPP     P  G H P
Sbjct: 690 HADLPPVPPNFPTCGDHVP 708



 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 306 PQQCGGK*RVWTAQSHGGTHYEHSH 380
           P Q G   R      + GTH+ H+H
Sbjct: 222 PIQQGNTFRYQWIAGNAGTHFWHAH 246


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 306 PQQCGGK*RVWTAQSHGGTHYEHSH 380
           P Q G   R      + GTH+ H+H
Sbjct: 222 PIQQGNTFRYQWIAGNAGTHFWHAH 246


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 277 PRGWTTPPFGECLKSVPPRNGLP 209
           PR WT     + +  V  ++GLP
Sbjct: 36  PRQWTREHVAQWINLVTQQHGLP 58


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 277 PRGWTTPPFGECLKSVPPRNGLP 209
           PR WT     + +  V  ++GLP
Sbjct: 36  PRQWTREHVAQWINLVTQQHGLP 58


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/38 (26%), Positives = 14/38 (36%)
 Frame = -2

Query: 368  IMSAPMGLSCPHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
            ++  P+ L         +  G P  GT  PPP     P
Sbjct: 1083 VIPDPVALKSAQQGSSSSSEGVPLKGTAVPPPSGSSGP 1120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,933
Number of Sequences: 336
Number of extensions: 3329
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)