Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2272
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 0.62
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 27 1.9
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 2.5
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 5.8
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 7.7
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 7.7
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 25 7.7
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.7
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 25 7.7
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 25 7.7
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.3 bits (60), Expect = 0.62
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 305 CPPMG-THFPPPRVDHSPFWGVS*VGPSPQRSSPSGEPLAGERQTSAAAP 159
CP G T PPP VDHS GP P S+ S P S+AAP
Sbjct: 40 CPVRGLTIPPPPSVDHS----APPSGPPPSYSN-SAAPATPAASASSAAP 84
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 1.9
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = -3
Query: 433 GATGTPGYGKIVGLIGVIWECS**VPPWD*AVHTRHFPPHCWGAPLWGPIFHPRGW 266
GA G P +GK W + WD PP W P W P FHP W
Sbjct: 182 GAIGCPHWGKF-------WLATLNCYDWD---GVNPIPPELWLLPDWIP-FHPGKW 226
>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 215 TVAGRDRLKTLPKRGSGPPSGV--ENGSP*GGTPTMWGEV 328
T + LKTLP + PP + ENG G P++ G +
Sbjct: 110 TALNQQYLKTLPTTSTPPPPAIFDENGEFVGDVPSVAGAI 149
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 338 PHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
P +PP + P G H PPP + H P
Sbjct: 203 PGEHMPPPPMHHKP-GEHMPPPPMHHEP 229
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 338 PHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
P +PP + P G H PPP + H P
Sbjct: 216 PGEHMPPPPMHHEP-GEHMPPPPMHHEP 242
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 338 PHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
P +PP + P G H PPP + H P
Sbjct: 229 PGEHMPPPPMHHEP-GEHMPPPPMHHEP 255
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 338 PHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
P +PP + P G H PPP + H P
Sbjct: 242 PGEHMPPPPMHHEP-GEHMPPPPMHHEP 268
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 338 PHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
P +PP + P G H PPP + H P
Sbjct: 255 PGEHMPPPPMHHEP-GEHMPPPPMHHEP 281
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 338 PHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
P +PP + P G H PPP + H P
Sbjct: 268 PGEHMPPPPMHHEP-GEHMPPPPMHHEP 294
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 338 PHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
P +PP + P G H PPP + H P
Sbjct: 281 PGEHMPPPPMHHEP-GEHMPPPPMHHEP 307
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 338 PHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
P +PP + P G H PPP + H P
Sbjct: 294 PGEHMPPPPMHHEP-GEHMPPPPMHHEP 320
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 338 PHSSLPPTLLGCPPMGTHFPPPRVDHSP 255
P +PP + P G H PPP + H P
Sbjct: 307 PGEHMPPPPMHHEP-GEHMPPPPMHHEP 333
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 348 SHGGTHYEHSHITPIKPTILPYPGVPVAPLVAPDHQ 455
S GG + +H+ P L Y P+AP+++ H+
Sbjct: 397 SSGGDLKKINHVLDTCPLCLNYETQPLAPVISLSHR 432
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -3
Query: 289 PIFHPRGWTTPPFGEC-LKSVPPRN 218
P+F PR + T PF + SV P N
Sbjct: 521 PVFTPRSFPTKPFSATDISSVQPTN 545
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 7.7
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 110 GPAT--GPMPRPHLYKPEEEPRHWFGAHPLGAPQKGKTVAGRDRLKTLPKRGSG 265
GPA G + RP K WF +G KG T+ DR K + K +G
Sbjct: 497 GPAVCNGYLNRPEDNKAAFTEDGWFKTGDVGEIAKGNTLRLIDRKKNIVKSLNG 550
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 7.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 113 PATGPMPRPHLYKP 154
PATG + +PH Y+P
Sbjct: 31 PATGGVKKPHRYRP 44
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 295 WGPIFHPRGWTTPP 254
WG FHP GW PP
Sbjct: 385 WG--FHPGGWGKPP 396
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 7.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 113 PATGPMPRPHLYKP 154
PATG + +PH Y+P
Sbjct: 31 PATGGVKKPHRYRP 44
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 7.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 113 PATGPMPRPHLYKP 154
PATG + +PH Y+P
Sbjct: 31 PATGGVKKPHRYRP 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,345
Number of Sequences: 5004
Number of extensions: 45973
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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