Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2272
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.71 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.2  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.8  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   8.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 363 HYEHSHITPI 392
           HY+H HITP+
Sbjct: 7   HYQHYHITPV 16


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 119  TGPMPRPHLYKPEE-EPRHWFGAHPLGAPQKGKTVAGRDRL-KTLPKRGSGPPSGVE 283
            TGP P P+    +E +P   +    +     G++V   + + +T P+R +GPP  +E
Sbjct: 959  TGP-PLPYAALIDELKPATRYTIRVIAEGPAGRSVPSAELIVRTEPQRPAGPPINLE 1014


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 119  TGPMPRPHLYKPEE-EPRHWFGAHPLGAPQKGKTVAGRDRL-KTLPKRGSGPPSGVE 283
            TGP P P+    +E +P   +    +     G++V   + + +T P+R +GPP  +E
Sbjct: 955  TGP-PLPYAALIDELKPATRYTIRVIAEGPAGRSVPSAELIVRTEPQRPAGPPINLE 1010


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 230 PSPQRSSPSGEPLAGERQTSA 168
           PS    SPS EPL  +++ SA
Sbjct: 18  PSGDILSPSSEPLDNDKEQSA 38


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 230 PSPQRSSPSGEPLAGERQTSA 168
           PS    SPS EPL  +++ SA
Sbjct: 18  PSGDILSPSSEPLDNDKEQSA 38


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 359 APMGLSCPHSSLPPTLLGCPPMGTHFPPP 273
           AP     PH S      G PP  +  PPP
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 261 VVHPRGWKMGPHRGAPQQC 317
           V+H   W  G  RG  Q+C
Sbjct: 87  VLHTTVWVAGAQRGNEQRC 105


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 70   FTIYTKRDNSQ 102
            +T+YTK DN++
Sbjct: 1213 YTVYTKADNAE 1223


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 292 PIGGHPNNVGGSDECGQ 342
           P   HP+N+ G + C Q
Sbjct: 108 PYRPHPHNLVGKEACKQ 124


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 292 PIGGHPNNVGGSDECGQ 342
           P   HP+N+ G + C Q
Sbjct: 108 PYRPHPHNLVGKEACKQ 124


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 341 CPHSSLPPTLLGCPPMGTH 285
           CP +   P+ LG    G H
Sbjct: 32  CPEALFQPSFLGMEACGIH 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,227
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)