Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2271
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...    26   3.0  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    25   6.8  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   9.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.0  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   9.0  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 355 KKVLNMCPFAFYCIIYISCFNKYRILHPASALIFFYR 465
           +KV+NM       I  +  FNK   L+  + ++FFYR
Sbjct: 50  EKVVNMAVIYLVDIDEVPDFNKMYELYDRTTIMFFYR 86


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 284 CFYYILGVRDK*FFVYNNLS 225
           C  YI G+R++  F+Y+++S
Sbjct: 50  CVQYIRGIREQELFIYDSVS 69


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 436 PASALIFFYRKMKVKFVYPVLFLLEL 513
           P + L+  ++KMK+K V+    LLEL
Sbjct: 347 PGAKLVEAFQKMKLKSVFAEKMLLEL 372


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 385 FYCIIYISCFNKYRILH 435
           F C+IYIS   +Y++LH
Sbjct: 528 FLCLIYISKDMEYKLLH 544


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 426 NITSSKRFNFFLSENES 476
           N+TS+   +FFLSEN++
Sbjct: 454 NLTSASNTHFFLSENQN 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,908
Number of Sequences: 5004
Number of extensions: 39483
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)