Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2271
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58734| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_2224| Best HMM Match : Extensin_2 (HMM E-Value=0.16)                30   1.0  
SB_21254| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)                27   9.4  

>SB_58734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  CGFFPWNEYPVSCKS*IINYYTTCKHIFCK 104
           CGFFP    PV C S  ++Y +   H++C+
Sbjct: 166 CGFFPGAVIPVCCIS--VSYLSIAHHLYCE 193


>SB_2224| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 299

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 319 RGSFLYKHV*FKKKVLNMCPFAFYCIIYISCFNKYRILHPASALIFFYRKMKVKFVY 489
           R SF+Y +  F+   +N  PF    I Y      +    P  A  F+Y   +  FVY
Sbjct: 66  RASFVY-YAPFRASFINYAPFRASFIYYAPFRASFVYYAPFRASFFYYAPFRASFVY 121


>SB_21254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 319 RGSFLYKHV*FKKKVLNMCPFAFYCIIYISCFNKYRILHPASALIFFYRKMKVKFVY 489
           R SF+Y +  F+   +N  PF    I Y      +    P  A  F+Y   +  FVY
Sbjct: 66  RASFVY-YAPFRASFINYAPFRASFIYYAPFRASFVYYAPFRASFFYYAPFRASFVY 121


>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
          Length = 663

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 405 NVYDTIKGKWTHVQYFFFKLHVFIQKRPSSNVTRV----ALLTHLFLLHSWRQGQI 250
           N+ + I G W  ++  + +LH ++++R S     V    A+  HL L + W Q  +
Sbjct: 212 NLEEYIDGIWQELKVLYLELHAYVRQRLSEQYPHVLSSQAIPAHL-LGNMWAQNWV 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,410
Number of Sequences: 59808
Number of extensions: 264969
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)