Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2271
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-4|AAC26961.1|  342|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    27   8.1  

>AF078788-4|AAC26961.1|  342|Caenorhabditis elegans Hypothetical
           protein ZC190.2 protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = -3

Query: 429 YSIFIKATNVYDTIKGKWTHVQYFFFKLHVFIQKRPSSNVTRVALLTHLFL 277
           +S+F  A  +Y   +    HV+Y  F+ + + +   +S   RV ++ +++L
Sbjct: 186 FSLFYTAKEIYQNQRSAPLHVRYELFQSYAYCRCAAASFTARVFIIAYVYL 236


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 364 LNMCPFAFYCIIYISCFNKYRILHPASALIFFYRKMKVK 480
           +N C  AF+C I I  F     L  A+A+  F+++  +K
Sbjct: 81  MNQCALAFFCCILILAF----FLELAAAVTLFHKQEHIK 115


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
           protein Y46G5A.4 protein.
          Length = 2145

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 429 YSIFIKATNVYDTIKGKWTHV 367
           +++ IK T +Y+  KG+WT +
Sbjct: 817 HTVIIKGTQIYNPEKGRWTEL 837


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 340 HV*FKKKVLNMCPFAFYCI--IYISCFNKYRILHPASALIFFYRKMKVKFVYPVLFLLEL 513
           +V F  ++L +  F  YCI  ++ S  NK+         I F+R + ++   P+LFL+ +
Sbjct: 216 NVFFVIEILQINYFVIYCIYNLFFSS-NKFTSAKTKKLQISFFRSIVMQVSIPLLFLIPI 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,495
Number of Sequences: 27780
Number of extensions: 222283
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)