Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2268
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   4.0  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   4.0  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.3  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    26   5.3  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.3  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    25   9.3  

>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 123  ISSLKASDDIHVVLLTRIRNHLITIEIVRKLATIK-KN*DIMS 248
            +SSL  S+   + L++ + NH++T E  R+L  I+ KN  + S
Sbjct: 1210 LSSLTNSEREVIRLVSNLSNHVLTNESARQLTKIRSKNAKVFS 1252


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 548 GLGTVSRMISGKFPLNTRNTEH*TTGTRRPVSTDACRPWL 429
           G+G+ S  +  +   N  N +  T GT  P +     PWL
Sbjct: 184 GIGSFSPSVDVQLGFNPENNDSITPGTILPSTVTVKTPWL 223


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
 Frame = -3

Query: 597  PYVSSC---KLYFGTNQNGRARNCVKDD---KRKISFEYA---EYGALNNRYSSACKY 451
            PY SS      Y GT++    +  +KD+   +++I   Y     YG+L +RY+   KY
Sbjct: 966  PYPSSAVESPSYSGTSERKSKKQMLKDEVLLEKEIRLLYRAMIRYGSLEHRYNDIVKY 1023


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 522 KRKISFEYAEYGALNNRYSSACKY*RLPALAISRE--MIVLNP*HENFMNKTTAK 364
           ++K    Y+EYG+++ +Y SA     +  LA  +E   ++LN  HE     T  K
Sbjct: 54  RKKPRVNYSEYGSVDGKYDSAYVSENVSGLATIKEANRLILN--HERRDPSTVIK 106


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 470 YRLFNAPYSAYSKEIFRLSSLTQFLARPFWFV 565
           Y L N PYS     I+ +SS  + L+ P++ V
Sbjct: 125 YSLPNFPYSKTCIFIYTVSSFIELLSEPYYEV 156


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 609 NCAGPYVSSCKLYFGTNQNGRAR----NCVKDDKRKISFEYAEYGALN 478
           NC GPY+S       ++  GR +    N ++D   K+    +E+ +LN
Sbjct: 288 NCIGPYLSKIARKLSSDFEGRRQAKTVNQIRDFVSKLGSLQSEHTSLN 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,367
Number of Sequences: 5004
Number of extensions: 52630
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)