Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2268
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0086 - 15069265-15069432,15069641-15069698,15070023-15070048     29   3.1  
04_03_0980 + 21406822-21409496,21410322-21410376                       29   4.1  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    28   5.5  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    27   9.6  
07_03_1253 + 25201629-25202084,25203264-25203399,25204564-252047...    27   9.6  
07_03_0577 + 19642820-19643308                                         27   9.6  
02_05_0783 + 31723330-31723585,31723683-31723857,31723953-317241...    27   9.6  
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026...    27   9.6  

>02_03_0086 - 15069265-15069432,15069641-15069698,15070023-15070048
          Length = 83

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 6/38 (15%)
 Frame = +3

Query: 111 LLNSISSLKASDDIHVVLLTRIRNHL------ITIEIV 206
           L+N  S L+++D IH+  LT ++NHL      ITI+IV
Sbjct: 43  LINHPSFLRSTDMIHMADLTLVKNHLKSFSNIITIQIV 80


>04_03_0980 + 21406822-21409496,21410322-21410376
          Length = 909

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 343 LRNKVRSNFLFCFETAYFLV*QNTVF 266
           +++KV++  LF FET Y++   N +F
Sbjct: 102 IKDKVKNTHLFAFETEYYITRNNILF 127


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 564 TNQNGRARNCVKDDKRKISFEYAEYGALNNRYSSACKY*RLPALAI 427
           +N NG AR+         S E  E+ A NN+Y +  +Y  L  L +
Sbjct: 543 SNVNGEARHLSLTPSETHSHEIGEFHASNNKYMNESQYPGLRTLLV 588


>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
            24779422-24780354,24780456-24780938,24780969-24781082,
            24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 487  SVFRVFKGNFPLIILDTVPSPTVLVRTEIQFTGG 588
            S+F   KG FP + L  V  PT+   TEI FT G
Sbjct: 1219 SLFTFNKGEFPKVDLLIVECPTI---TEISFTEG 1249


>07_03_1253 +
           25201629-25202084,25203264-25203399,25204564-25204700,
           25205439-25206121,25206767-25206911,25207669-25207701
          Length = 529

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 537 CVKDDKRKISFEYAEYGALNN 475
           C +D+ R + +EY E+G+L N
Sbjct: 173 CCEDENRLLVYEYMEHGSLEN 193


>07_03_0577 + 19642820-19643308
          Length = 162

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 396 VRDLKRSFPGI*PGPASVSTYRPTSTGCLMLRIPRIQ 506
           V+D+K   P + P PA+++  RPT+ G    ++PR++
Sbjct: 110 VKDVKLPAPRLAPTPANMAAPRPTTAG---KKLPRLK 143


>02_05_0783 +
           31723330-31723585,31723683-31723857,31723953-31724166,
           31724388-31725032,31725199-31725335,31725440-31725554
          Length = 513

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 281 LD*EIRSFEAKQKIRSNFIT*SLWVIACLAVVLFMKFSC 397
           L+ ++RSFE+  +I SN     LW   CL     +  SC
Sbjct: 139 LEADLRSFESTFEIGSNHFEDPLWSSVCLPDAQLVPSSC 177


>02_04_0448 -
           23001579-23001683,23001783-23002382,23002479-23002628,
           23002788-23003015,23003188-23003302,23003392-23004659,
           23006621-23006692
          Length = 845

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 71  VATQSCVPAYRIAVIKFNLVSQSQ**YSRCAVDENQEPLNHN*NRSQIGNNKKKLRYYVL 250
           V   S V   R A I  NL  +S    +   +D N EP++   N+     NK+ L + + 
Sbjct: 612 VEDPSFVSNNRTAAINLNLPPESNITNTSNLIDVNIEPVDQVFNQHVNSTNKELLEHLIH 671

Query: 251 NNI-SPKN 271
           + I  PKN
Sbjct: 672 HQIDEPKN 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,894,696
Number of Sequences: 37544
Number of extensions: 315259
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)