Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2268
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 437 AGKRQYLQADEYRLFNAPYSAYSKEIFRLSSL---TQFLARPFWFVPK 571
           A  R YL+  E    N P    ++ +  L +L   T FLA PF F+ K
Sbjct: 25  AQHRFYLRLTEQPFINLPSDVVAQTVISLIALIYGTSFLANPFLFIKK 72


>AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical
           protein T05H4.9 protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
 Frame = +2

Query: 290 EIRSFEAKQKIRSNFIT*SLWV--------IACLAVVLFMKFSC*GFKTIISR---DIAR 436
           EI + E K +   NFI  S WV        I    +  F+   C   K  I +   D  R
Sbjct: 182 EINNNETKVE---NFIASSNWVSKWKKSHRIVSRRITKFVTRRCMRDKVAIRKTADDFVR 238

Query: 437 AGKRQYLQADEYRLFNAPYSAYSKEIFRLSSL 532
             KR+    D Y +FNA  +   KE++   SL
Sbjct: 239 DTKREMSPFDPYMIFNADQTGIQKELYGARSL 270


>Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical
           protein K05D4.2 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 242 NISVFFYCCQF---ANDFNCD*VVPDSRQ 165
           N S++FYCC     +ND   + V+P+ R+
Sbjct: 144 NFSIWFYCCYIWNGSNDIKNEIVIPEFRE 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,375,579
Number of Sequences: 27780
Number of extensions: 298693
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)