Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2264
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0173 - 26140725-26140838,26141125-26141352,26141440-261415... 31 0.54
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424... 31 0.54
11_01_0636 - 5095754-5095974,5097188-5097254,5097467-5098363 29 2.9
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 29 2.9
02_05_0127 - 26053055-26053306,26055415-26055564,26055657-260557... 29 2.9
11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960 28 3.8
02_01_0046 - 311752-312138,312220-312372,312458-312653,312702-31... 28 3.8
11_06_0434 - 23512921-23513529 28 5.1
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 28 5.1
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 27 6.7
06_01_0310 - 2240745-2242130 27 6.7
03_01_0063 + 502441-502657,502765-503027,503115-503528 27 6.7
02_01_0461 - 3328662-3329087,3329124-3329201,3329370-3329597,333... 27 6.7
04_03_0799 - 19805190-19805749,19806316-19806403 27 8.8
01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722 27 8.8
>05_06_0173 -
26140725-26140838,26141125-26141352,26141440-26141580,
26141707-26141790,26141866-26141955,26142048-26142233,
26142327-26142458,26142559-26142741,26142967-26143151,
26143915-26144089
Length = 505
Score = 31.1 bits (67), Expect = 0.54
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +1
Query: 271 LQSRQGIRY*IP*EQRER*SSWPLKEEATASRPAALEA*NESYHADPGFDHRYQGYQSSD 450
LQ+ + Y + + R R +S L E S ++L + + DHR G+ S
Sbjct: 314 LQNEATVAYYLLLDNRLRTTSGYLGAEFHESMESSLAQVTPAETPNSATDHRQHGHMESP 373
Query: 451 PQ*AGHHFG---RWILGLQS 501
HHF +W LGLQS
Sbjct: 374 GFGLRHHFAADRKWALGLQS 393
>04_04_1121 -
31041629-31041793,31041891-31042022,31042255-31042425,
31042521-31042622,31042703-31042807,31043115-31043286,
31043916-31043980,31044179-31044502,31044729-31044846,
31044928-31045011,31045472-31045603,31045714-31046570,
31046735-31046849,31047371-31047481,31047763-31047824
Length = 904
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 514 FLQEKIVTQESNDQSDGQLTEDQSFDSLDTDDRNQDRHDS 395
F + KI S+ +SD + + DQS S D +D + + HD+
Sbjct: 256 FFKSKIKKNWSDSESDSEDSGDQSDHSTDDEDSSDESHDA 295
>11_01_0636 - 5095754-5095974,5097188-5097254,5097467-5098363
Length = 394
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 514 FLQEKIVTQESNDQSDGQLTEDQSFDSLDT--DDRNQDRHDSFH 389
F + +I+ ++ NDQ + + ED+ DS + +D N+D + H
Sbjct: 325 FEEIEILEEDENDQDEEEEDEDEDEDSYENPFEDENEDSYKGEH 368
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 212 PKSSPPDHR*LCRCLSRPMPSPFPILHRLCCP 117
P+ PP C+ + P P P+P + CCP
Sbjct: 153 PEKPPPKPE--CKLVPYPYPVPYPYAGQWCCP 182
>02_05_0127 -
26053055-26053306,26055415-26055564,26055657-26055747,
26055835-26055995,26056455-26056579,26056680-26056886,
26056936-26056996
Length = 348
Score = 28.7 bits (61), Expect = 2.9
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +2
Query: 50 VISDCSEAGSPMACLKVKVLSYLD-NKVGV---GSETGRALDETNIDKVIYD---RVARI 208
V+ A S A L + YLD N V V G+E G L E DKV++ RV RI
Sbjct: 38 VLKPSEFAPSTAAFLAANIPKYLDANAVKVVQGGAEVGEELMEHRWDKVLFTGNARVGRI 97
Query: 209 LDTNEFKFKLP 241
+ T K P
Sbjct: 98 IMTKAAKHLTP 108
>11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960
Length = 376
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -1
Query: 514 FLQEKIVTQESNDQSDGQLTEDQSFDSLDTDDRNQDRHDSFHFKLQEQQDGKQ 356
F ++I E D ++ ED+ DS + +D N+D + + + +DG +
Sbjct: 318 FSFKEIEILEGYDNDQDEVEEDEDEDSHEDEDENEDSYGDPYEDEDDDEDGDE 370
>02_01_0046 -
311752-312138,312220-312372,312458-312653,312702-312792,
312808-313228
Length = 415
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 222 NSSLNCRSLCSKTRRSLTEPTGDSIL-NSLRTTRTVKL 332
N SLN ++LC +T R + DSIL N L T + +KL
Sbjct: 25 NLSLNFKTLCPRTSRGNFKCKIDSILRNHLGTAKILKL 62
>11_06_0434 - 23512921-23513529
Length = 202
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -1
Query: 508 QEKIVTQESNDQSDG---QLTEDQSFDSLDTDDRNQDRHDSFHFKLQEQQDGKQ 356
+E+++T + D D + ED FD + D N+D +S + + +D ++
Sbjct: 134 KEELMTDDEEDDDDDDEDESEEDDEFDEKEDDSDNEDDEESSDDEEETSEDDEE 187
>05_04_0209 -
19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 508 QEKIVTQESNDQSDGQLTEDQSFDSLDTDDRNQDR 404
+E+ +E D+ D + ED+ + D DD +DR
Sbjct: 726 EEEEEEEEEEDEDDDEEEEDEDDEEEDEDDEEEDR 760
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 502 KIVTQESNDQSDGQLTEDQSFDSLDTDDRNQDRHDS 395
KI+ + D D + D S+ ++ T+D DRH S
Sbjct: 432 KILQETGEDTIDVLVFADGSWKAISTNDERSDRHSS 467
>06_01_0310 - 2240745-2242130
Length = 461
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 253 EHKLRQFKLEFVGVQNPRHPIIDDFVDVCLVQCPPRFRSY 134
+H ++FK E + + +H + V CLV PRF Y
Sbjct: 141 DHADKEFKSEVSAIASAQHAHLVRLVGFCLVPRGPRFLVY 180
>03_01_0063 + 502441-502657,502765-503027,503115-503528
Length = 297
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 147 VSDPTPTLLSRYDRTFTLR 91
+S P PT++S +DR FT++
Sbjct: 204 ISSPAPTIMSDHDRLFTIQ 222
>02_01_0461 -
3328662-3329087,3329124-3329201,3329370-3329597,
3330181-3330204
Length = 251
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 323 RSRCSQGIQYRIPCRLCKRPPRFGT*TPA 237
+SRCS+ ++ CR+C+ + GT T A
Sbjct: 147 KSRCSRTVKDETSCRICQTRGQLGTNTRA 175
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 212 PKSSPPDHR*LCRCLSRPMPSPFPILHRLCCP 117
P+ D + +C+ + P+P P P CCP
Sbjct: 85 PEKKKKDEKPVCKLVPFPVPYPAPPPPPACCP 116
>01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722
Length = 460
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 125 KVGVGSETGRALDETNIDKVIYDRVARILDTNEFKFK 235
+ G G+ TGR ++ V+ D+V+R +D++ F+
Sbjct: 104 QAGAGAVTGRISSRSHHAAVVVDKVSRAIDSHPGPFR 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,458
Number of Sequences: 37544
Number of extensions: 304521
Number of successful extensions: 906
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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