Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2264
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 30 1.3
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 28 5.2
SB_4536| Best HMM Match : Krr1 (HMM E-Value=4) 28 5.2
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08) 27 9.1
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 511 LQEKIVTQESNDQSDGQLTEDQSFDSLDTDDRNQDRHDSFHFKLQEQQDGKQ 356
L+++ QE D+ GQ +D+ + D D QDR K QE+QD +Q
Sbjct: 852 LEKQYQKQEKPDK--GQEKQDREQEKPDKDQEKQDREQEKPDKDQEKQDHEQ 901
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = -1
Query: 508 QEKIVTQESNDQSDGQLTEDQSFDSLDTDDRNQDRHDSFHFKLQEQQDGKQ 356
QEK+ +E + D Q TE++ + + + Q++ + K +E ++ K+
Sbjct: 259 QEKVEEKEKGEVEDAQTTEEEEKQKEEAERKKQEKLEKLAKKKEELKERKR 309
>SB_39059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 496 VTQESNDQSDGQLTEDQSFDSLDTDDRNQDRHD 398
++ +SND D +D D D DD+N D D
Sbjct: 5 ISYKSNDNYDDDDDDDDDDDDDDDDDKNDDDDD 37
>SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = -1
Query: 487 ESNDQSDGQLTEDQSFDSLDTDDRNQDRHDSFHFKLQEQQD 365
+ +D D D D D DD + D HD H + D
Sbjct: 113 DDDDHDDDHHHHDDDDDDHDDDDHDDDHHDDDHDHHDDDDD 153
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 337 ATSFTVLVVLREFNIESPVGSVRDLRVLEHKLRQFKLEFVGVQNPR 200
A+S L+V ++ N P+G +RD+ E +F + F G NP+
Sbjct: 2013 ASSQAKLLVKKKGNRPQPIGMIRDIEGYEGGQARFDVHFTG--NPK 2056
>SB_4536| Best HMM Match : Krr1 (HMM E-Value=4)
Length = 246
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 481 NDQSDGQLTEDQSFDSLDTDDRNQDRH 401
+D +G + +D FD D +D ++D H
Sbjct: 43 DDDDNGDINDDNDFDDDDDNDGDEDNH 69
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 103 FHFEACHGRSGFGTITDNTVQQIITRP 23
+H CH + TIT N + Q +T P
Sbjct: 1151 YHHTKCHHTTSHSTITQNAITQPVTVP 1177
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 487 ESNDQSDGQLTEDQSFDSLDTDDRNQDRHDS 395
+ ND +D D+ +D D DD + D D+
Sbjct: 57 DDNDGNDDDDDSDEDYDDDDNDDNDDDNDDN 87
>SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -1
Query: 487 ESNDQSDGQLTEDQSFDSLDTDDR--NQDRHDSFHFKLQEQQDG 362
+ ND D +D D +D DD N D HD + + DG
Sbjct: 678 DDNDNDDDGNDDDYGDDDVDDDDHVDNDDCHDDNDDGVDDDDDG 721
>SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)
Length = 219
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 514 FLQEKIVTQESNDQSDGQLTEDQSFDSLDTDDRNQDRHDSFHFKLQEQQDG 362
F+ + +E D + G+ ED+ FD D DD + S K + + DG
Sbjct: 169 FMYDSQEEEEGEDFNPGEDEEDEDFD--DEDDELNEEQTSRGEKRKREDDG 217
>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -1
Query: 505 EKIVTQESNDQSDGQLTEDQSFDSLDTDDRNQDRHDSFHFKLQEQQD 365
E +++ E N D +D+SF D D N D ++ E+++
Sbjct: 157 EILLSDEPNSSHDDYYDKDESFKVQDADSDNDDDNNEMEDDEDEEEE 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,785
Number of Sequences: 59808
Number of extensions: 322720
Number of successful extensions: 1119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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