Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2261
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   3.4  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   4.5  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   5.9  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   7.8  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.8  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.8  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 298  ELDPVSKYIQS----ASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRR 155
            +L P SK  Q+    A + ++  AA  +N + ++  N+I    +RL+NRR +
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNRRTK 1297


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 4   GQKLCGLRLWVNSLVEPFVASDGFGEDGD 90
           G  L  +  ++ +L   +V SD FGEDGD
Sbjct: 482 GSTLRNVNDYLAALNPGYVTSDDFGEDGD 510


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 474 LLRRDKFAFVYKALGRSRPSIKRGAIAY 557
           LLR +    VYK L R  P  K   IAY
Sbjct: 267 LLRHNHVEKVYKILSRIHPEAKPAEIAY 294


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 119 NGAF-RQYKHRSPSSPNPSLATKGSTSEL 36
           NG+F  ++ H S +SP+PS+  K  + EL
Sbjct: 546 NGSFWSKFIHSSSASPSPSIDMKKESLEL 574


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 365 GLYNLKGFQVGAGRRKRTL 421
           G+ N++GF  G+GR K  L
Sbjct: 196 GVSNVRGFSTGSGRSKNVL 214


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 470 NPLQNLHTAPS*RYASVVFAYGGPHQLETPSGYTIPI 360
           +P+   H AP   YAS   A  G  +  TP+  T+PI
Sbjct: 272 SPMYGSHAAP---YASTPSAAVGSSRGSTPASATVPI 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,194
Number of Sequences: 5004
Number of extensions: 48738
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)