Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2261
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0527 - 6913266-6913802 28 0.087
11_06_0693 - 26334574-26336121 32 0.28
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 32 0.37
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 29 2.6
08_02_1460 + 27295201-27295269,27295968-27296074,27296252-272963... 29 2.6
09_02_0283 + 6819086-6820270 29 3.4
04_04_1680 + 35318330-35318693,35319789-35319877,35320082-353200... 29 3.4
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 29 3.4
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433... 29 3.4
12_01_0060 - 499291-501228 28 6.0
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314... 28 6.0
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 28 6.0
03_02_0096 - 5600815-5601348 23 7.6
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462... 27 8.0
>04_01_0527 - 6913266-6913802
Length = 178
Score = 27.9 bits (59), Expect(2) = 0.087
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 215 RGRRKLHTRSCRPFGKPSTSPK 150
R RR+ H R CRP P SP+
Sbjct: 100 RRRRRAHRRQCRPSPPPPLSPE 121
Score = 25.0 bits (52), Expect(2) = 0.087
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 86 PSSPNPSLATKGSTSELTHRRNPQSFW 6
P SP PS A HRR+ +W
Sbjct: 117 PLSPEPSTAAVAEPPAAAHRRHQGGWW 143
>11_06_0693 - 26334574-26336121
Length = 515
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 299 QVIVEVHVPLEPWCSDGYPAKSGLYNLKGFQVGAGRRKRTLRLHTVMTGPYASFVE 466
+V ++ + LEPW S Y + LY G AG +R +R +V P S +E
Sbjct: 451 EVALKELINLEPWNSGNYVLLANLYAETGRWEEAGDARRLMRRMSVQKAPGQSLIE 506
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 286 VSKYIQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDPP 128
VS Y +S S+ F+ +AR P+V ++ NY+ +RRR + +T P
Sbjct: 53 VSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105
>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +2
Query: 263 CRLYILTDGVELQVIVEVHVPLEPWCSDGYPAKSGLYNLKGFQVGAGRRKRTLRLHTVMT 442
C+++ T+ E V+ ++ + LEPW S Y S +Y+ +G A + + ++ V
Sbjct: 1237 CKIHRNTELAE-HVLKQL-ILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEK 1294
Query: 443 GPYASFVE 466
P S+VE
Sbjct: 1295 VPACSWVE 1302
>08_02_1460 +
27295201-27295269,27295968-27296074,27296252-27296384,
27296621-27296714,27296828-27297030,27297167-27297240,
27297331-27297406,27297530-27297585,27297939-27298026,
27298115-27298255,27298338-27298487,27299015-27299221
Length = 465
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 475 CYGGTSLLSSTKHWVEVVLV 534
CYGGT+ L + +WVE +L+
Sbjct: 119 CYGGTAALLNCVNWVETLLI 138
>09_02_0283 + 6819086-6820270
Length = 394
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +1
Query: 19 GLRLWVNSLVEPFVASDGFGEDGDRCLYCLKAPLMNQEDP**RALGD 159
G R+ SL VA D G D D + LKAP + + DP A+GD
Sbjct: 104 GDRVCALSLSGLAVARDALGMDDDALVVALKAPGVWRVDPVLAAVGD 150
>04_04_1680 +
35318330-35318693,35319789-35319877,35320082-35320087,
35320638-35321300
Length = 373
Score = 28.7 bits (61), Expect = 3.4
Identities = 24/83 (28%), Positives = 33/83 (39%)
Frame = +2
Query: 245 LKVAQRCRLYILTDGVELQVIVEVHVPLEPWCSDGYPAKSGLYNLKGFQVGAGRRKRTLR 424
L++ R ++ D VE V ++V E SD L+ GF G R
Sbjct: 157 LELTGPSRAILIVDPVEFDVELKVKGRRE---SDDQILSFQLFRQNGFFNGRQSVTLVRR 213
Query: 425 LHTVMTGPYASFVEGYLVTEGQV 493
H +M G Y+ F Y V G V
Sbjct: 214 FHPIMLGWYSKFKFTYAVLNGAV 236
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 113 AFRQYKHRSPSSPNPSLATKGSTSE 39
A + K + PS PNPS+ +K S+S+
Sbjct: 319 ATKSQKKKRPSGPNPSIKSKASSSD 343
>02_05_0345 -
28142434-28142658,28143087-28143158,28143252-28143371,
28143483-28143674,28144919-28145017,28145448-28145594,
28146310-28146513
Length = 352
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -3
Query: 418 CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRNVDLHDDLELDPVSKYI 272
C L+ + + ++ RFC PW +L ++L++DP++KY+
Sbjct: 233 CLLSRGKVDPSEEIMVLDRFC------PWKLHLFELEEELKIDPLTKYV 275
>12_01_0060 - 499291-501228
Length = 645
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 320 VPLEPWCSDGYPAKSGLYNLKGFQVGAGRRKRTLRLHTVMTGPYASFVE 466
+ LEPW S Y S +Y+ +G A + + ++ V P S+VE
Sbjct: 469 IRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVE 517
>03_06_0233 +
32530174-32530492,32531081-32531127,32531277-32531413,
32531673-32531841,32532598-32532885,32533021-32533107,
32533454-32534152,32534244-32534735
Length = 745
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -2
Query: 173 GKPSTSPKARHHGSS*FINGAFRQYKHRSPSSPNPSLATKGSTS 42
G PS+ K R GSS ++ +F+ ++ S N +L++ +T+
Sbjct: 527 GSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDNVALSSVAATT 570
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -3
Query: 214 VAAGNYIPDPVDRLVNRRRRPKHVITDPPDSLTVLLGNTST 92
VAA I D +DRL N R P ++ PP + G TST
Sbjct: 52 VAAHRDIVDTIDRLTNENRLPHLLLYGPPGT-----GKTST 87
>03_02_0096 - 5600815-5601348
Length = 177
Score = 23.4 bits (48), Expect(2) = 7.6
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = -2
Query: 86 PSSPNPSLATKGSTSELTHRRNPQSFW 6
P SP PS A HRR+ W
Sbjct: 116 PLSPEPSTAAVAEPPAAAHRRHQGGRW 142
Score = 22.6 bits (46), Expect(2) = 7.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 215 RGRRKLHTRSCRPFGKPSTSPK 150
R RR+ H R RP P SP+
Sbjct: 99 RRRRRAHRRRRRPSPPPPLSPE 120
>05_01_0536 -
4622767-4622865,4623550-4623673,4624571-4624685,
4624784-4625028,4625081-4625316
Length = 272
Score = 27.5 bits (58), Expect = 8.0
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -3
Query: 370 QSRFCRIAV-GAPWFQRNVDLHDDLELDPVSKYIQSASLRHF--EKAARHENPLV--VAA 206
+++F ++AV GAP+ R VDL D + +Q HF K E LV V+
Sbjct: 118 KAKFVKVAVDGAPYL-RKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSG 176
Query: 205 GNYIPDPVDR 176
Y+P D+
Sbjct: 177 NEYVPTYEDK 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,082,984
Number of Sequences: 37544
Number of extensions: 393701
Number of successful extensions: 1044
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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