Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2261
         (570 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112350-1|AAI12351.1|  955|Homo sapiens THRAP3 protein protein.       30   6.6  
BC112330-1|AAI12331.1|  955|Homo sapiens thyroid hormone recepto...    30   6.6  
AL591845-1|CAH71859.1|  955|Homo sapiens thyroid hormone recepto...    30   6.6  
AF117756-1|AAD22034.1|  955|Homo sapiens thyroid hormone recepto...    30   6.6  

>BC112350-1|AAI12351.1|  955|Homo sapiens THRAP3 protein protein.
          Length = 955

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 328 QRNVDLHDDLELDPVSKYIQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPK 149
           +++ ++H  +++ P +   +   L H E  +  E P   A G Y  DPVD  ++  RR K
Sbjct: 670 KKSPEIHRRIDISPST--FRKHGLAHDEMKSPRE-PGYKAEGKYKDDPVDLRLDIERRKK 726

Query: 148 H 146
           H
Sbjct: 727 H 727


>BC112330-1|AAI12331.1|  955|Homo sapiens thyroid hormone receptor
           associated protein 3 protein.
          Length = 955

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 328 QRNVDLHDDLELDPVSKYIQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPK 149
           +++ ++H  +++ P +   +   L H E  +  E P   A G Y  DPVD  ++  RR K
Sbjct: 670 KKSPEIHRRIDISPST--FRKHGLAHDEMKSPRE-PGYKAEGKYKDDPVDLRLDIERRKK 726

Query: 148 H 146
           H
Sbjct: 727 H 727


>AL591845-1|CAH71859.1|  955|Homo sapiens thyroid hormone receptor
           associated protein 3 protein.
          Length = 955

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 328 QRNVDLHDDLELDPVSKYIQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPK 149
           +++ ++H  +++ P +   +   L H E  +  E P   A G Y  DPVD  ++  RR K
Sbjct: 670 KKSPEIHRRIDISPST--FRKHGLAHDEMKSPRE-PGYKAEGKYKDDPVDLRLDIERRKK 726

Query: 148 H 146
           H
Sbjct: 727 H 727


>AF117756-1|AAD22034.1|  955|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP150
           protein.
          Length = 955

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 328 QRNVDLHDDLELDPVSKYIQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPK 149
           +++ ++H  +++ P +   +   L H E  +  E P   A G Y  DPVD  ++  RR K
Sbjct: 670 KKSPEIHRRIDISPST--FRKHGLAHDEMKSPRE-PGYKAEGKYKDDPVDLRLDIERRKK 726

Query: 148 H 146
           H
Sbjct: 727 H 727


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,826,889
Number of Sequences: 237096
Number of extensions: 1964814
Number of successful extensions: 4402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4402
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)