Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2261
(570 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 70 2e-12
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 59 4e-09
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 59 4e-09
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 53 3e-07
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 53 3e-07
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 48 7e-06
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 41 0.001
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 40 0.003
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 40 0.003
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 40 0.003
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 39 0.004
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 35 0.089
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 35 0.089
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 70.1 bits (164), Expect = 2e-12
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Frame = -3
Query: 502 TKANLSLRNKVTLYKTCIRPRHDGMQA*CSL--TAARTNLKPLQVIQSRFCRIAVGAPWF 329
+++ LSL NK+T+YK + P + C + A +++K +Q IQ++ R+ G WF
Sbjct: 782 SRSKLSLSNKLTIYKQILAPN---WKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWF 838
Query: 328 QRNVDLHDDLELDPVSKYIQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPK 149
RN LH DL+L V I S R+ ++ RH N L A P R +N RR+P+
Sbjct: 839 VRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLASALNRSRP---PRRLN-RRQPR 894
Query: 148 HVITDPP 128
+IT P
Sbjct: 895 DLITRSP 901
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 59.3 bits (137), Expect = 4e-09
Identities = 33/94 (35%), Positives = 50/94 (53%)
Frame = -3
Query: 499 KANLSLRNKVTLYKTCIRPRHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRN 320
++ LSL K LY + ++P A+R+N+ +Q QSR RI GAPW+ RN
Sbjct: 774 RSPLSLEFKALLYNSVLKPIWTYGSELWG-NASRSNIDIIQRAQSRILRIITGAPWYLRN 832
Query: 319 VDLHDDLELDPVSKYIQSASLRHFEKAARHENPL 218
++H DL++ V + I ++ EK H NPL
Sbjct: 833 ENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 59.3 bits (137), Expect = 4e-09
Identities = 33/94 (35%), Positives = 50/94 (53%)
Frame = -3
Query: 499 KANLSLRNKVTLYKTCIRPRHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRN 320
++ LSL K LY + ++P A+R+N+ +Q QSR RI GAPW+ RN
Sbjct: 774 RSPLSLEFKALLYNSVLKPIWTYGSELWG-NASRSNIDIIQRAQSRILRIITGAPWYLRN 832
Query: 319 VDLHDDLELDPVSKYIQSASLRHFEKAARHENPL 218
++H DL++ V + I ++ EK H NPL
Sbjct: 833 ENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 52.8 bits (121), Expect = 3e-07
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Frame = -3
Query: 490 LSLRNKVTLYKTCIRP-RHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRNVD 314
LSL KV +YK+ + P G+Q AA+++L ++++Q++ R GAPW+ R D
Sbjct: 791 LSLGCKVNIYKSILAPCLFYGLQV--YGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRD 848
Query: 313 LHDDLELDPVSKYIQSASLRHFEKAARHENPLVVAAGNYIPDPVD-RLVNRRRRPKHVIT 137
+ DL++ + +Q+ + ++ E+ H N L G D R +RR +H
Sbjct: 849 IERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKRHHPH 908
Query: 136 DPPD 125
D P+
Sbjct: 909 DLPN 912
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 52.8 bits (121), Expect = 3e-07
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Frame = -3
Query: 490 LSLRNKVTLYKTCIRP-RHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRNVD 314
LSL KV +YK+ + P G+Q AA+++L ++++Q++ R GAPW+ R D
Sbjct: 593 LSLGCKVNIYKSILAPCLFYGLQV--YGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRD 650
Query: 313 LHDDLELDPVSKYIQSASLRHFEKAARHENPLVVAAGNYIPDPVD-RLVNRRRRPKHVIT 137
+ DL++ + +Q+ + ++ E+ H N L G D R +RR +H
Sbjct: 651 IERDLKVPKLGDKLQNIAQKYLERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKRHHPH 710
Query: 136 DPPD 125
D P+
Sbjct: 711 DLPN 714
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 48.4 bits (110), Expect = 7e-06
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = -3
Query: 499 KANLSLRNKVTLYKTCIRPRH-DGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQR 323
K+ ++LR K +Y C+ P G+Q AA++N +QV+Q+R R P++ R
Sbjct: 789 KSTMTLRAKRAVYVHCVAPIWLYGIQIWG--IAAKSNYNRIQVLQNRAMRAITDCPYYVR 846
Query: 322 NVDLHDDLELDPVSKYIQSASLRHFEKAARHENPL 218
LH DL L V + I + R+ ++ RH + L
Sbjct: 847 GTTLHRDLNLHTVEEQISRHTSRYSDRLRRHHSIL 881
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = -3
Query: 490 LSLRNKVTLYKTCIRPRHD-GMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRNVD 314
LSL +KV LY + ++P G Q + A+ +N+ +Q QS+ R GAPW+ R+ +
Sbjct: 779 LSLDHKVLLYNSILKPIWTYGSQLWGN--ASNSNIDIIQRAQSKILRTITGAPWYVRSEN 836
Query: 313 LHDDLELDPVSKYI 272
+ DL + V+ I
Sbjct: 837 IQRDLNIPSVTNAI 850
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Frame = -3
Query: 496 ANLSLRNKVTLYKTCIRPRHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRNV 317
++L K+ L+K + P A + T K +Q +++++ R + A + R
Sbjct: 847 SHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQA 906
Query: 316 DLHDDLELDPVSKYIQSASLRHFEKAARHENPLV--VAAGNYIPDPVDRLVNR 164
D+ + + AS R+ HENPL+ + Y P+ ++ NR
Sbjct: 907 DIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELSKNR 959
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Frame = -3
Query: 496 ANLSLRNKVTLYKTCIRPRHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRNV 317
++L K+ L+K + P A + T K +Q +++++ R + A + R
Sbjct: 847 SHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQA 906
Query: 316 DLHDDLELDPVSKYIQSASLRHFEKAARHENPLV--VAAGNYIPDPVDRLVNR 164
D+ + + AS R+ HENPL+ + Y P+ ++ NR
Sbjct: 907 DIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELSKNR 959
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Frame = -3
Query: 496 ANLSLRNKVTLYKTCIRPRHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRNV 317
++L K+ L+K + P A + T K +Q +++++ R + A + R
Sbjct: 847 SHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQA 906
Query: 316 DLHDDLELDPVSKYIQSASLRHFEKAARHENPLV--VAAGNYIPDPVDRLVNR 164
D+ + + AS R+ HENPL+ + Y P+ ++ NR
Sbjct: 907 DIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELSKNR 959
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Frame = -3
Query: 496 ANLSLRNKVTLYKTCIRPRHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRNV 317
++L K+ L+K + P A + T K +Q +++++ R + A + R
Sbjct: 400 SHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQA 459
Query: 316 DLHDDLELDPVSKYIQSASLRHFEKAARHENPLV--VAAGNYIPDPVDRLVNR 164
D+ + + AS R+ HENPL+ + Y P+ ++ NR
Sbjct: 460 DIRTKYNIKSFDETFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELSKNR 512
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 34.7 bits (76), Expect = 0.089
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = -3
Query: 499 KANLSLRNKVTLYKTCIRPRHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRN 320
K+ LS+ NK+ ++KT P A+T++K LQ+ Q++ ++ + P++
Sbjct: 808 KSKLSISNKIIIFKTIFNPILMYGSPVWG-RCAQTHIKKLQICQNKLLKLIMNLPYYTNT 866
Query: 319 VDLHDDLELDPVSKYIQ 269
LH + V + IQ
Sbjct: 867 KYLHIKAGVQKVQQKIQ 883
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 34.7 bits (76), Expect = 0.089
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = -3
Query: 499 KANLSLRNKVTLYKTCIRPRHDGMQA*CSLTAARTNLKPLQVIQSRFCRIAVGAPWFQRN 320
K+ LS+ NK+ ++KT P A+T++K LQ+ Q++ ++ + P++
Sbjct: 756 KSKLSISNKIIIFKTIFNPILMYGSPVWG-RCAQTHIKKLQICQNKLLKLIMNLPYYTNT 814
Query: 319 VDLHDDLELDPVSKYIQ 269
LH + V + IQ
Sbjct: 815 KYLHIKAGVQKVQQKIQ 831
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,472,161
Number of Sequences: 53049
Number of extensions: 620159
Number of successful extensions: 1590
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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