Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2261
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83106-5|CAB05492.1| 392|Caenorhabditis elegans Hypothetical pr... 32 0.33
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 30 1.0
Z82273-1|CAB54978.2| 565|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z82263-7|CAJ76937.1| 565|Caenorhabditis elegans Hypothetical pr... 28 4.1
U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical p... 28 4.1
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 4.1
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 4.1
Z68106-9|CAE17838.1| 551|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z49207-10|CAE17907.1| 551|Caenorhabditis elegans Hypothetical p... 28 5.4
AL137227-6|CAB70236.2| 159|Caenorhabditis elegans Hypothetical ... 28 5.4
U39743-4|AAA80438.4| 581|Caenorhabditis elegans Hypothetical pr... 27 7.2
>Z83106-5|CAB05492.1| 392|Caenorhabditis elegans Hypothetical
protein F22B8.6 protein.
Length = 392
Score = 31.9 bits (69), Expect = 0.33
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Frame = -3
Query: 409 TAARTNLKPLQVIQSRFCRIAVGAPWFQRNVDLHDDLELDPVSKY-------IQSASLRH 251
TA R N + + V+ + F P+FQR + L D+ + ++KY I A++ +
Sbjct: 165 TAKRANPEIVVVVDNTFM-----TPYFQRPLSLGADIAVHSITKYINGHSDIIMGAAITN 219
Query: 250 FEKAARHENPLVVAAGNYIPDPVD-RLVNRRRRPKHV 143
++ +H + + A G +P P D LVNR + HV
Sbjct: 220 NDEFQQHLHFMQRAIGG-VPSPFDCFLVNRGLKTLHV 255
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 298 ELDPVSKYIQSASLRH--FEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDP 131
E+D +SK I S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 3753 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 3807
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 298 ELDPVSKYIQSASLRH--FEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDP 131
E+D +SK I S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 4707 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 4761
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 298 ELDPVSKYIQSASLRH--FEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDP 131
E+D +SK I S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 5610 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 5664
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 298 ELDPVSKYIQSASLRH--FEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDP 131
E+D +SK I S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 6513 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 6567
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 298 ELDPVSKYIQSASLRH--FEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDP 131
E+D +SK I S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 7416 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 7470
>Z82273-1|CAB54978.2| 565|Caenorhabditis elegans Hypothetical
protein F56F12.1 protein.
Length = 565
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 570 TVKTGTRSRRVLY*DDFYPMLCRRKQTCPSVTR*PSTKLAYGPVMTVCKRSVRLRRPAPT 391
T K+ + R + D YP+ T PS T P+T A P+ V ++ ++P T
Sbjct: 437 TPKSASHDRSI---SDTYPVSSSTTSTWPSHTTTPTTTTAAAPIAAVAPQTYTEQQPMST 493
>Z82263-7|CAJ76937.1| 565|Caenorhabditis elegans Hypothetical
protein F56F12.1 protein.
Length = 565
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 570 TVKTGTRSRRVLY*DDFYPMLCRRKQTCPSVTR*PSTKLAYGPVMTVCKRSVRLRRPAPT 391
T K+ + R + D YP+ T PS T P+T A P+ V ++ ++P T
Sbjct: 437 TPKSASHDRSI---SDTYPVSSSTTSTWPSHTTTPTTTTAAAPIAAVAPQTYTEQQPMST 493
>U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical
protein ZK1127.10 protein.
Length = 392
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = -3
Query: 409 TAARTNLKPLQVIQSRFCRIAVGAPWFQRNVDLHDDLELDPVSKYI-------QSASLRH 251
TA + N + + V+ + F +P+FQR + L D+ + ++KYI A +
Sbjct: 165 TAKKANPEIVVVVDNTFM-----SPYFQRPISLGADVVVHSITKYINGHSDVVMGAVITD 219
Query: 250 FEKAARHENPLVVAAGNYIPDPVD-RLVNRRRRPKHV 143
++ +H + +A G +P P D LVNR + H+
Sbjct: 220 NDEFQQHLFFMQLAVG-AVPSPFDCFLVNRGLKTLHI 255
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 310 HDDLELDPVSKYIQSASLRHFEKAARHENPLVVAAGNYI 194
H D E + ++ I S RH ++ E+P +V +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 310 HDDLELDPVSKYIQSASLRHFEKAARHENPLVVAAGNYI 194
H D E + ++ I S RH ++ E+P +V +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>Z68106-9|CAE17838.1| 551|Caenorhabditis elegans Hypothetical
protein F41E7.9 protein.
Length = 551
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 197 HTRSCRPFGKPSTSPKARHH-GSS*FINGAFRQYKHRSPSSPNPSLATKGSTSELTHRRN 21
HT S F S++ H SS +IN RQY P S + S T S ++ + N
Sbjct: 61 HTASASRFNTDSSNTARSHDKASSKYINEDNRQYHPSEPQSISNSTTTTNSMTDSSSIGN 120
Query: 20 PQS 12
++
Sbjct: 121 QEN 123
>Z49207-10|CAE17907.1| 551|Caenorhabditis elegans Hypothetical
protein F41E7.9 protein.
Length = 551
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 197 HTRSCRPFGKPSTSPKARHH-GSS*FINGAFRQYKHRSPSSPNPSLATKGSTSELTHRRN 21
HT S F S++ H SS +IN RQY P S + S T S ++ + N
Sbjct: 61 HTASASRFNTDSSNTARSHDKASSKYINEDNRQYHPSEPQSISNSTTTTNSMTDSSSIGN 120
Query: 20 PQS 12
++
Sbjct: 121 QEN 123
>AL137227-6|CAB70236.2| 159|Caenorhabditis elegans Hypothetical
protein F58D5.5 protein.
Length = 159
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 104 QYKHRSPSSPNPSLATKGSTSELTHRRNPQS 12
QY SPSSP+ S G + +H+ P+S
Sbjct: 3 QYSSFSPSSPSSSSRPSGGGGQSSHQTTPKS 33
>U39743-4|AAA80438.4| 581|Caenorhabditis elegans Hypothetical
protein R173.3 protein.
Length = 581
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 223 PLVVAAGNYIPDPVDRLVNRRRRPKHVI--TDPPDSLTVLLGN 101
P++ G +P+P ++L RR+ VI T SL +LL N
Sbjct: 307 PIIDGVGGILPEPPEQLTLHRRKTPIVIGTTKDESSLRILLLN 349
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,964
Number of Sequences: 27780
Number of extensions: 299140
Number of successful extensions: 746
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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