Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2260
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    28   0.55 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   1.3  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    26   1.7  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   3.9  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   5.1  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   5.1  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 0.55
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = -3

Query: 281 LNYLY*VSLGSTQTTISKSYSSWL-SPCSPNCPGETEKAFGPIVSLHSNKKK--TRTE*S 111
           LN L   S G+T TT+S + S++L S C+P    +T    G  +S   ++ K   + + +
Sbjct: 570 LNTLPPTSQGATSTTVSSASSNFLSSSCTP--IDDTNSVTGSTLSCSFDEMKLSDKIDDA 627

Query: 110 NRLRSDCF 87
           N L+ D F
Sbjct: 628 NSLKDDDF 635


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 97  PIVFVLLVDDSADFVVPQSINNRPFYEIP 11
           P++F    + + +FVVP  +N   FY +P
Sbjct: 184 PLLFKSTPEGAREFVVPSRLNPGKFYALP 212


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 2   ENARNFIKRPVIYRLRNYKVCRVIY 76
           ENARN+ KR     L N K CR+ Y
Sbjct: 86  ENARNYFKRHGGVSLLNSKDCRLKY 110


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 295 ANSSNDRSESRPTEKLNERQTGPKPTP 375
           ANSSN   ++R   K   +   PK TP
Sbjct: 507 ANSSNSSKKTRKRRKPTPKSFNPKATP 533


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 150 AYYWPESLFSFTRTVGRART 209
           A  W + ++SFTR++G  R+
Sbjct: 621 ASQWKDEVWSFTRSIGECRS 640


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 242  SECFRERPNIGSSRADVSRIPLMTDRSRGPLRNSMNVK 355
            S C    PN+ +SR   SR+  ++    G L  S  +K
Sbjct: 1055 STCIMSLPNVSASRIATSRVLKLSSLKPGNLHKSGYLK 1092


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,724
Number of Sequences: 5004
Number of extensions: 23804
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)