Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2260
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526...    27   3.6  
09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433     27   6.3  
01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148...    26   8.4  
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    26   8.4  

>03_05_0834 -
           28051067-28051381,28051675-28052120,28052330-28052671,
           28053170-28053310,28053419-28053489,28053575-28053640,
           28053874-28054017,28054149-28054207,28054246-28054369,
           28054730-28054862,28055138-28055187,28055715-28055824,
           28057355-28057436,28057536-28057705,28057812-28058498,
           28058645-28058794,28058908-28059039,28059444-28059594,
           28060253-28060344,28062478-28062585
          Length = 1190

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 4   KCSEFHKKACYLSIEELQSLPSHLLIKQKQSDLNRFDH 117
           +CS      C LS EE  S+ SHL++   ++     +H
Sbjct: 317 QCSRTRTIRCSLSSEESDSISSHLVVDSSKAKRTHGEH 354


>09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433
          Length = 210

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 329 GRDSDRSLEEFAKHLPLNYLY*VSLGSTQTTISKSYSSWLSPCSPNC 189
           G++S  SL+ F  HL  NY   V  GST+      + +W S  +P C
Sbjct: 112 GKNSSSSLQ-FDLHLGSNYWDTVQAGSTKQVYEALFVAWAS-WAPVC 156


>01_03_0242 +
           14113721-14113966,14114102-14114260,14114495-14114868,
           14114939-14115419,14115651-14116192,14116253-14116531,
           14116837-14116918,14116994-14117086,14117173-14117367
          Length = 816

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 136 KKKLEQNDRID*GPIVFVLLVDDSADFVVPQSINNRPFYEIPSI 5
           KK+ E+   +      ++L +DD    V PQ  N  PF E+ +I
Sbjct: 104 KKRGEKGRNLMSKETYYILALDDDGKPVEPQHKNKTPFEELGTI 147


>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = -3

Query: 314 RSLEEFAKHLPLNYLY*VSLGSTQTTISKSYSSWLSPCSPNCPGETEKAFGPIVSLHSNK 135
           +S  + ++ +P      +  G+ Q+  S S +  LSP SPN P         +VSL +  
Sbjct: 266 KSRSDPSREIPAKGRELIIFGNNQSPSSSSPA--LSPYSPNFPSSPNPISPQVVSLIAWA 323

Query: 134 KKTRTE*SNRLRSDCF 87
           +         LR D F
Sbjct: 324 ESMANHTDEELRPDLF 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,829,387
Number of Sequences: 37544
Number of extensions: 147957
Number of successful extensions: 352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)