Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2260
         (376 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    27   0.30 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    26   0.40 
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   2.8  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   2.8  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   5.0  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 10  SEFHKKACYLSIEELQSLPSHLLIKQKQSDLNR 108
           S FH  +C +++     LP HLL K+     NR
Sbjct: 830 SAFHSTSCEVAVVLAGELPYHLLAKEDARCYNR 862


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 160 GPKAFSVSPGQLGEHGLSQEE*D 228
           G K F   PG++GE GL  E+ D
Sbjct: 421 GEKGFKGEPGRIGERGLMGEKGD 443


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 260 SLGSTQTTISKSYSSWLSPCSPNCPGETEKAFGPIVSLHSNKK 132
           S GST ++ S S   +L P   + PG   +  GPI S   +++
Sbjct: 213 SNGSTLSSPSGSRMEYLLPHQQHPPGAGVQGAGPIPSQQKHQQ 255



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 263 VSLGSTQTTISKSYSSWLSP 204
           ++ G+T +T+S +Y   LSP
Sbjct: 155 IATGATSSTVSLTYEDELSP 174


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 209 SPCSPNCPGETEKA 168
           SP  PNCPG  E A
Sbjct: 957 SPDCPNCPGVRESA 970


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 100 GPIVFVLLVDDSADFVVPQSIN 35
           GP++F+L ++D    + P SI+
Sbjct: 750 GPLLFILFINDVTLALPPDSIS 771


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 333,370
Number of Sequences: 2352
Number of extensions: 5076
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 28804305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)