Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2260
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    24   0.51 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   2.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   2.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   8.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   8.3  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 277 FKGRCFANSSNDRSESRPTEKLNERQ 354
           F+G      SN+ +E  P EKL ER+
Sbjct: 87  FEGEMAEKISNELNEMCPLEKLKERR 112


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 200 SPNCPGETEKAFGPIVSLHSNKKKTRTE*SNRLRSD 93
           S N  G   ++F    S HS  + +R E  N  R+D
Sbjct: 213 SSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRND 248


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -3

Query: 227 SYSSWLSPCSPNCPGETEKAF 165
           S+ +W+ P S   PG     F
Sbjct: 544 SHGNWIYPASMTIPGSNSAVF 564


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 265 RSLSEALRQLLANPTPPG 212
           + ++E+++    NP PPG
Sbjct: 319 QKIAESMKTARENPGPPG 336


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 265 RSLSEALRQLLANPTPPG 212
           + ++E+++    NP PPG
Sbjct: 319 QKIAESMKTARENPGPPG 336


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 265 RSLSEALRQLLANPTPPG 212
           + ++E+++    NP PPG
Sbjct: 258 QKIAESMKTARENPGPPG 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,760
Number of Sequences: 438
Number of extensions: 1688
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)