Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2259
         (536 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q92PM3 Cluster: HYPOTHETICAL SIGNAL PEPTIDE PROTEIN; n=...    35   1.0  
UniRef50_Q6NII3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  

>UniRef50_Q92PM3 Cluster: HYPOTHETICAL SIGNAL PEPTIDE PROTEIN; n=2;
           Sinorhizobium|Rep: HYPOTHETICAL SIGNAL PEPTIDE PROTEIN -
           Rhizobium meliloti (Sinorhizobium meliloti)
          Length = 163

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 329 MTRKSQFHYLISTLSFEPDSKIASLQYGRNVYPKTTMRSESGPTSTILIWFKNT 490
           +T   + H L   L+ +P  +   L Y R + P   M  + G T  +++W KNT
Sbjct: 40  ITASGRTHDLTVELAVDPSQREQGLMYRRQMAPDHGMLFDFGETRPVMMWMKNT 93


>UniRef50_Q6NII3 Cluster: Putative uncharacterized protein; n=1;
           Corynebacterium diphtheriae|Rep: Putative
           uncharacterized protein - Corynebacterium diphtheriae
          Length = 284

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 29/88 (32%), Positives = 43/88 (48%)
 Frame = +2

Query: 167 RSDSFFICKLYYSYPSCVGSPCHKLYTGHSFPFF*IWFKLGYHTVNTTTYPV*DMTRKSQ 346
           +SD     KL+ +YP+C+ S   K Y   +   +  W   GY    T+TY V        
Sbjct: 143 KSDDDIADKLFDAYPNCIDSVAKK-YQLEATQTYGRW---GYS--YTSTYDV-------- 188

Query: 347 FHYLISTLSFEPDSKIASLQYGRNVYPK 430
            H+++S L  +PDS +  L+  RNV PK
Sbjct: 189 VHFIVSLLRTDPDSPV--LEAMRNVAPK 214


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,369,500
Number of Sequences: 1657284
Number of extensions: 10288593
Number of successful extensions: 19229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19226
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)